PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G75340.1
Common NameCG1, F1B16.12
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 435aa    MW: 46797.9 Da    PI: 8.6655
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G75340.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.39.6e-12326327
                 S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                  elCr+f+r G C+yG++C+F H++
  AT1G75340.1  3 KELCRNFQR-GSCRYGENCRFLHPQ 26
                 69*******.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.8E-8126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.15127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6225IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-9326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-8326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015031Biological Processprotein transport
GO:0051028Biological ProcessmRNA transport
GO:0005635Cellular Componentnuclear envelope
GO:0005643Cellular Componentnuclear pore
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MRKELCRNFQ RGSCRYGENC RFLHPQQAKP NNPFGFGTQN QQQQQQQQQQ NSSNPFGFGV  60
QSGGSSRPNQ FQNTWSRTAS TPTGGGAAAS TQQTGKQTQP ADHKCTDPAA CKRVMQDDFK  120
NERPMWKLTC YGHWKYFPCD VTGDISYEEL RAVAYEEAKR GIPLQSIVER ERNLQNSKIA  180
EFENFLRNPY KGSVTANQSP FAATTPSIFP QSSQINSPSP AFSGFNQQTA FSNTNAGGLS  240
SSGPPNAFAS FNQQTTFPNT NAGGVSSSGP PNPFASFTQQ SNNQQTAFSN TNAGGLSSSG  300
PPNAFASFNK QPNAFSVNTP QPVPSGPSGF QTNPSTTFKP ASFGPGPGFA TTPQNNNIFG  360
QSTPTPATNT SQNNQTAFNF NVPVASFTAP AINTTNTSSG TELQIGGDPV DSSIWLKEKW  420
NPGEIPEQAP PDAFV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.162560.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO425632270.0
Genevisible261121_at0.0
Expression AtlasAT1G75340-
AtGenExpressAT1G75340-
ATTED-IIAT1G75340-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G75340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
BioGRIDAT1G75340
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G75340
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0147440.0BT014744.1 Arabidopsis thaliana At1g75340.1 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_565108.20.0Zinc finger C-x8-C-x5-C-x3-H type family protein
SwissprotQ9FWS30.0C3H16_ARATH; Zinc finger CCCH domain-containing protein 16
TrEMBLD7KSN00.0D7KSN0_ARALL; Zinc finger (CCCH-type) family protein
STRINGAT1G75340.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107242731
Representative plantOGRP78131415
Publications ? help Back to Top
  1. Dal Bosco C, et al.
    Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
    J. Biol. Chem., 2004. 279(2): p. 1060-9
    [PMID:14576160]
  2. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  3. Delaney KJ, et al.
    Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit.
    Plant Physiol., 2006. 140(4): p. 1507-21
    [PMID:16500995]
  4. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]
  5. Tamura K,Fukao Y,Iwamoto M,Haraguchi T,Hara-Nishimura I
    Identification and characterization of nuclear pore complex components in Arabidopsis thaliana.
    Plant Cell, 2010. 22(12): p. 4084-97
    [PMID:21189294]