PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G75340.1 | ||||||||
Common Name | CG1, F1B16.12 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 435aa MW: 46797.9 Da PI: 8.6655 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.3 | 9.6e-12 | 3 | 26 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 elCr+f+r G C+yG++C+F H++ AT1G75340.1 3 KELCRNFQR-GSCRYGENCRFLHPQ 26 69*******.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 4.8E-8 | 1 | 26 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.15 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-6 | 2 | 25 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.5E-9 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-8 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0015031 | Biological Process | protein transport | ||||
GO:0051028 | Biological Process | mRNA transport | ||||
GO:0005635 | Cellular Component | nuclear envelope | ||||
GO:0005643 | Cellular Component | nuclear pore | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MRKELCRNFQ RGSCRYGENC RFLHPQQAKP NNPFGFGTQN QQQQQQQQQQ NSSNPFGFGV 60 QSGGSSRPNQ FQNTWSRTAS TPTGGGAAAS TQQTGKQTQP ADHKCTDPAA CKRVMQDDFK 120 NERPMWKLTC YGHWKYFPCD VTGDISYEEL RAVAYEEAKR GIPLQSIVER ERNLQNSKIA 180 EFENFLRNPY KGSVTANQSP FAATTPSIFP QSSQINSPSP AFSGFNQQTA FSNTNAGGLS 240 SSGPPNAFAS FNQQTTFPNT NAGGVSSSGP PNPFASFTQQ SNNQQTAFSN TNAGGLSSSG 300 PPNAFASFNK QPNAFSVNTP QPVPSGPSGF QTNPSTTFKP ASFGPGPGFA TTPQNNNIFG 360 QSTPTPATNT SQNNQTAFNF NVPVASFTAP AINTTNTSSG TELQIGGDPV DSSIWLKEKW 420 NPGEIPEQAP PDAFV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.16256 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 42563227 | 0.0 | ||||
Genevisible | 261121_at | 0.0 | ||||
Expression Atlas | AT1G75340 | - | ||||
AtGenExpress | AT1G75340 | - | ||||
ATTED-II | AT1G75340 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G75340.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT1G75340 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G75340 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT014744 | 0.0 | BT014744.1 Arabidopsis thaliana At1g75340.1 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_565108.2 | 0.0 | Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||
Swissprot | Q9FWS3 | 0.0 | C3H16_ARATH; Zinc finger CCCH domain-containing protein 16 | ||||
TrEMBL | D7KSN0 | 0.0 | D7KSN0_ARALL; Zinc finger (CCCH-type) family protein | ||||
STRING | AT1G75340.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10724 | 27 | 31 | Representative plant | OGRP7813 | 14 | 15 |
Link Out ? help Back to Top | |
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Phytozome | AT1G75340.1 |
Entrez Gene | 843870 |
iHOP | AT1G75340 |
wikigenes | AT1G75340 |
Publications ? help Back to Top | |||
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