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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
AT1G68550.1 |
Common Name | CRF10, ERF118, T26J14.12 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
ERF |
Protein Properties |
Length: 324aa MW: 35568.6 Da PI: 4.3355 |
Description |
ERF family protein |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 57.3 | 3.9e-18 | 112 | 159 | 2 | 53 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53
+ GVr++k +g+W+AeIrdp + +r +lg+f+t eeAaka++a ++++
AT1G68550.1 112 KPVGVRQRK-WGKWAAEIRDPI----KkTRTWLGTFDTLEEAAKAYDAKKLEF 159
789*****9.**********72....35********************99875 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009873 | Biological Process | ethylene-activated signaling pathway |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 324 aa
Download sequence Send
to blast |
MVAIRKEQSL SGVSSEIKKR AKRNTLSSLP QETQPLRKVR IIVNDPYATD DSSSDEEELK 60 VPKPRKMKRI VREINFPSME VSEQPSESSS QDSTKTDGKI AVSASPAVPR KKPVGVRQRK 120 WGKWAAEIRD PIKKTRTWLG TFDTLEEAAK AYDAKKLEFD AIVAGNVSTT KRDVSSSETS 180 QCSRSSPVVP VEQDDTSASA LTCVNNPDDV STVAPTAPTP NVPAGGNKET LFDFDFTNLQ 240 IPDFGFLAEE QQDLDFDCFL ADDQFDDFGL LDDIQGFEDN GPSALPDFDF ADVEDLQLAD 300 SSFGFLDQLA PINISCPLKS FAAS
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Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
At.21149 | 0.0 | bud| flower| leaf| silique| vegetative tissue |
Functional Description ? help
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Source |
Description |
TAIR | encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC011915 | 0.0 | AC011915.5 Arabidopsis thaliana chromosome 1 BAC T26J14 genomic sequence, complete sequence. |
GenBank | AY059782 | 0.0 | AY059782.1 Arabidopsis thaliana putative AP2 domain transcription factor (At1g68550) mRNA, complete cds. |
GenBank | AY091303 | 0.0 | AY091303.1 Arabidopsis thaliana putative AP2 domain transcription factor (At1g68550) mRNA, complete cds. |
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] - Dal Bosco C, et al.
Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. J. Biol. Chem., 2004. 279(2): p. 1060-9 [PMID:14576160] - Yamada K, et al.
Empirical analysis of transcriptional activity in the Arabidopsis genome. Science, 2003. 302(5646): p. 842-6 [PMID:14593172] - Vergnolle C, et al.
The cold-induced early activation of phospholipase C and D pathways determines the response of two distinct clusters of genes in Arabidopsis cell suspensions. Plant Physiol., 2005. 139(3): p. 1217-33 [PMID:16258011] - Nakano T,Suzuki K,Fujimura T,Shinshi H
Genome-wide analysis of the ERF gene family in Arabidopsis and rice. Plant Physiol., 2006. 140(2): p. 411-32 [PMID:16407444] - Hayden CA,Jorgensen RA
Identification of novel conserved peptide uORF homology groups in Arabidopsis and rice reveals ancient eukaryotic origin of select groups and preferential association with transcription factor-encoding genes. BMC Biol., 2007. 5: p. 32 [PMID:17663791] - Tran MK,Schultz CJ,Baumann U
Conserved upstream open reading frames in higher plants. BMC Genomics, 2008. 9: p. 361 [PMID:18667093]
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