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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
AT1G61660.1 |
Common Name | BHLH112, EN64, T13M11.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
bHLH |
Protein Properties |
Length: 393aa MW: 43041.2 Da PI: 6.5085 |
Description |
bHLH family protein |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 20.2 | 1.1e-06 | 281 | 319 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
R +++++ + L++l+ + +K + a++L++A+eYIk L
AT1G61660.1 281 VRKENLRDQITSLQQLVSPF-----GKTDTASVLQEAIEYIKFL 319
5778999**********998.....8****************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0042631 | Biological Process | cellular response to water deprivation |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
GO:0071215 | Biological Process | cellular response to abscisic acid stimulus |
GO:0071472 | Biological Process | cellular response to salt stress |
GO:2000214 | Biological Process | regulation of proline metabolic process |
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process |
GO:0005634 | Cellular Component | nucleus |
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding |
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding |
GO:0005515 | Molecular Function | protein binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 393 aa
Download sequence Send
to blast |
MAEEFKATAS ICGGGGGAWW NSPRSVMSPS DHFLSPCFGA AITSNDFSSQ ENHLKSRMTC 60 TDNNNIVFGQ READSDSGGS TVTMDSTLQM MGLGFSSNCS SDWNQTILQE DLNSSFIRSS 120 QDQDHGQGFL STTTSPYILN PACSSSPSTS SSSSLIRTFY DPEPSPYNFV STTSGSINDP 180 QLSWANKTNP HHQVAYGLIN SFSNNANSRP FWNSSSTTNL NNTTPSNFVT TPQIISTRLE 240 DKTKNLKTRA QSESLKRAKD NESAAKKPRV TTPSPLPTFK VRKENLRDQI TSLQQLVSPF 300 GKTDTASVLQ EAIEYIKFLH DQVTVLSTPY MKQGASNQQQ QQISGKSKSQ DENENHELRG 360 HGLCLVPISS TFPVANETTA DFWTPTFGGN NFR
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Function -- GeneRIF ? help
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- the functional role of a basic helix-loop-helix transcription factor from Arabidopsis, AtbHLH112, in response to abiotic stress, was investigated.
[PMID: 25827016] - These results suggested that the rice gene HLH068 and the Arabidopsis gene HLH112 share partially redundant functions in the regulation of abiotic stress responses but have opposite functions to control flowering in Arabidopsis.[HLH112]
[PMID: 28631168]
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF380649 | 0.0 | AF380649.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds. |
GenBank | AY113072 | 0.0 | AY113072.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds. |
Publications
? help Back to Top |
- Heim MA, et al.
The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. Mol. Biol. Evol., 2003. 20(5): p. 735-47 [PMID:12679534] - Toledo-Ortiz G,Huq E,Quail PH
The Arabidopsis basic/helix-loop-helix transcription factor family. Plant Cell, 2003. 15(8): p. 1749-70 [PMID:12897250] - Yamada K, et al.
Empirical analysis of transcriptional activity in the Arabidopsis genome. Science, 2003. 302(5646): p. 842-6 [PMID:14593172] - Bailey PC, et al.
Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana. Plant Cell, 2003. 15(11): p. 2497-502 [PMID:14600211] - Guan Y,Nothnagel EA
Binding of arabinogalactan proteins by Yariv phenylglycoside triggers wound-like responses in Arabidopsis cell cultures. Plant Physiol., 2004. 135(3): p. 1346-66 [PMID:15235117] - Wong CE, et al.
Transcriptional profiling implicates novel interactions between abiotic stress and hormonal responses in Thellungiella, a close relative of Arabidopsis. Plant Physiol., 2006. 140(4): p. 1437-50 [PMID:16500996] - Ditt RF, et al.
The Arabidopsis thaliana transcriptome in response to Agrobacterium tumefaciens. Mol. Plant Microbe Interact., 2006. 19(6): p. 665-81 [PMID:16776300] - Ascencio-Ib
Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. Plant Physiol., 2008. 148(1): p. 436-54 [PMID:18650403] - Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] - Brady SM, et al.
A stele-enriched gene regulatory network in the Arabidopsis root. Mol. Syst. Biol., 2011. 7: p. 459 [PMID:21245844] - Efroni I, et al.
Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Dev. Cell, 2013. 24(4): p. 438-45 [PMID:23449474] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Liu Y, et al.
Arabidopsis AtbHLH112 regulates the expression of genes involved in abiotic stress tolerance by binding to their E-box and GCG-box motifs. New Phytol., 2015. 207(3): p. 692-709 [PMID:25827016] - Chen HC, et al.
The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis. Plant Mol. Biol., 2017. 94(4-5): p. 531-548 [PMID:28631168]
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