PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G60040.1 | ||||||||
Common Name | AGL49, T2K10.9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 284aa MW: 32159 Da PI: 6.3899 | ||||||||
Description | AGAMOUS-like 49 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 35 | 1.9e-11 | 23 | 63 | 10 | 50 |
HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 q f +R g KKA+ELSvLC+ v i +++++ l+ ++ AT1G60040.1 23 QSFFKQRFPGFKKKASELSVLCGNSVGFICYGPDNDLHVWP 63 445666888999****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00266 | 2.37E-20 | 7 | 91 | No hit | No description |
SuperFamily | SSF55455 | 1.96E-13 | 20 | 98 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-10 | 20 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 10.806 | 21 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020090 | anatomy | embryo sac central cell | ||||
PO:0025195 | anatomy | pollen tube cell | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001017 | developmental stage | M germinated pollen stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MAPRQKKPNK SDDDDGDLHR KKQSFFKQRF PGFKKKASEL SVLCGNSVGF ICYGPDNDLH 60 VWPQSQDHNP QALHEIVAKF NALSDERRKN HACDLNDFPH HLKGLSREEL RKHLLHLDSQ 120 LLGVREQKIE ILKKTLTGSS EKDGARVSEN SAISDHKLKI EPNLTDILSE DHLIRVSDKK 180 LGSCDVFDEL AYVVRGSRNL NENVSNYESK DAAYTGMDHL GTFGGNYLQE AAAELYQTYN 240 LGNFCDDHVW DLEFASRLPP LHTFSDPLMT TNTCQTMSSD MISI |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 263735_s_at | 0.0 | ||||
Expression Atlas | AT1G60040 | - | ||||
AtGenExpress | AT1G60040 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G60040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
IntAct | Search Q9ZUI9 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G60040 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | T2K10 | 0.0 | AC005966.2 Arabidopsis thaliana chromosome 1 BAC T2K10 sequence, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_176212.1 | 0.0 | AGAMOUS-like 49 | ||||
Swissprot | Q9ZUI9 | 0.0 | AGL49_ARATH; Agamous-like MADS-box protein AGL49 | ||||
TrEMBL | A0A178W4C9 | 0.0 | A0A178W4C9_ARATH; AGL49 | ||||
STRING | AT1G60040.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11232 | 9 | 28 |
Link Out ? help Back to Top | |
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Phytozome | AT1G60040.1 |
Entrez Gene | 842298 |
iHOP | AT1G60040 |
wikigenes | AT1G60040 |