PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G31640.1 | ||||||||
Common Name | AGL92, F27M3.16 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 464aa MW: 52211.5 Da PI: 6.1891 | ||||||||
Description | AGAMOUS-like 92 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 37.7 | 2.7e-12 | 13 | 50 | 6 | 43 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 r tf kR +gi KK +EL +LCd++++ +i+s+ AT1G31640.1 13 RHFRRATFRKRNAGIRKKLHELTTLCDIKACAVIYSPF 50 566899******************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.2E-11 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.05E-30 | 1 | 83 | No hit | No description |
PROSITE profile | PS50066 | 14.227 | 1 | 48 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.31E-21 | 2 | 93 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-6 | 2 | 22 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-11 | 11 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-6 | 22 | 37 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-6 | 37 | 58 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MRTKTKLVLI PDRHFRRATF RKRNAGIRKK LHELTTLCDI KACAVIYSPF ENPTVWPSTE 60 GVQEVISEFM EKPATERSKT MMSHETFLRD QITKEQNKLE SLRRENRETQ LKHFMFDCVG 120 GKMSEQQYGA RDLQDLSLFT DQYLNQLNAR KKFLTEYGES SSSVPPLFDV AGANPPVVAD 180 QAAVTVPPLF AVAGANLPVV ADQAAVTVPP LFAVAGANLP VVADQAAVNV PTGFHNMNVN 240 QNQYEPVQPY VPTGFSDHIQ YQNMNFNQNQ QEPVHYQALA VAGAGLPMTQ NQYEPVHYQS 300 LAVAGGGLPM SQLQYEPVQP YIPTVFSDNV QYQHMNLYQN QQEPVHYQAL GVAGAGLPMN 360 QNQYEPVQPY VPTGFSDHFQ FENMNLNQNQ QEPVQYQAPV DFNHQIQQGN YDMNLNQNMK 420 HAHIPFMDGN YYNYHQPPTV GLTSTGHMPS TTTTTTNNNN NNNV |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18398050 | 0.0 | ||||
Genevisible | 246577_at | 0.0 | ||||
Expression Atlas | AT1G31640 | - | ||||
AtGenExpress | AT1G31640 | - | ||||
ATTED-II | AT1G31640 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G31640.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT1G65360, AT1G69120 | |||||
IntAct | Search Q9C6V4 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G31640 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC074360 | 0.0 | AC074360.5 Arabidopsis thaliana chromosome 1 BAC F27M3 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_174445.1 | 0.0 | AGAMOUS-like 92 | ||||
Swissprot | Q9C6V4 | 0.0 | AGL92_ARATH; Agamous-like MADS-box protein AGL92 | ||||
TrEMBL | A0A178W3Z2 | 0.0 | A0A178W3Z2_ARATH; AGL92 | ||||
STRING | AT1G31640.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 | Representative plant | OGRP114 | 13 | 173 |
Link Out ? help Back to Top | |
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Phytozome | AT1G31640.1 |
Entrez Gene | 840051 |
iHOP | AT1G31640 |
wikigenes | AT1G31640 |