PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G31050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 434aa MW: 48978.8 Da PI: 6.8652 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.4 | 0.00014 | 325 | 358 | 15 | 53 |
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 ++++++ +L++++ + +K + a++L++A+ YI+ AT1G31050.1 325 KLRDKITTLQQIVSPF-----GKTDTASVLQEAITYINF 358 7899999999999998.....8***************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.356 | 310 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.51E-4 | 324 | 364 | No hit | No description |
SuperFamily | SSF47459 | 3.66E-9 | 325 | 377 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.5E-7 | 325 | 367 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0009005 | anatomy | root | ||||
PO:0020100 | anatomy | hypocotyl |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MLREECTPSS SWWEDVQHHH NDHANSISST SFYHKSSNNN SHANASCEED NLSVSTVRAS 60 NRLDLTAESS NHHSLSASNQ PASSSDELLR DHVVSSHNHL WSLAFLPGRS LGDQMMDHHH 120 HIASRNSSTT SELPSFEPAC HNGNGNGWIY DPNQVRYDQS SDQRLSKLTD LVGKHWSIAP 180 PNNPDMNHNL HHHFDHDHSQ NDDISMYRQA LEVKNEEDLC YNNGSSGGGS LFHDPIESSR 240 SFLDIRLSRP LTDINPSFKP CFKALNVSEF NKKEHQTASL AAVRLGTTNA GKKKRCEEIS 300 DEVSKKAKCS EGSTLSPEKE LPKAKLRDKI TTLQQIVSPF GKTDTASVLQ EAITYINFYQ 360 EQVKLLSTPY MKNSSMKDPW GGWDREDHNK RGPKHLDLRS RGLCLVPISY TPIAYRDNSA 420 TDYWNPTYRG SLYR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 334182968 | 0.0 | ||||
Genevisible | 265159_at | 1e-173 | ||||
Expression Atlas | AT1G31050 | - | ||||
AtGenExpress | AT1G31050 | - | ||||
ATTED-II | AT1G31050 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G31050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT1G54060 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G31050 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493488 | 0.0 | AB493488.1 Arabidopsis thaliana At1g31050 mRNA for hypothetical protein, partial cds, clone: RAAt1g31050. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_174391.5 | 0.0 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Swissprot | Q9FYJ6 | 0.0 | BH111_ARATH; Transcription factor bHLH111 | ||||
TrEMBL | A0A178W315 | 0.0 | A0A178W315_ARATH; Uncharacterized protein | ||||
STRING | AT1G31050.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8055 | 19 | 23 | Representative plant | OGRP9620 | 5 | 6 |
Link Out ? help Back to Top | |
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Phytozome | AT1G31050.1 |
Entrez Gene | 839991 |
iHOP | AT1G31050 |
wikigenes | AT1G31050 |