PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G28310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | Dof | ||||||||
Protein Properties | Length: 311aa MW: 34020.7 Da PI: 9.411 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.6 | 2.8e-38 | 23 | 83 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ +lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGg+ rknk+++ AT1G28310.1 23 PQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGSYRKNKRVK 83 67899*****************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 3.3E-33 | 26 | 81 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 6.0E-27 | 27 | 81 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.901 | 27 | 81 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 29 | 65 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MQSKNMIVAS SHQQQQQQQP QQPQPQLKCP RCDSSNTKFC YYNNYSLSQP RHFCKACKRY 60 WTRGGTLRNV PVGGSYRKNK RVKRPSTATT TTASTVSTTN SSSPNNPHQI SHFSSMNHHP 120 LFYGLSDHMS SCNNNLPMIP SRFSDSSKTC SSSGLESEFL SSGFSSLSAL GLGLPHQMSH 180 DHTINGSFIN NSTTNKPFLL SGLFGSSMSS SSTLLQHPHK PMNNGGDMLG QSHLQTLASL 240 QDLHVGGNNE DMKYKEGKLD QISGNINGFM SSSSSLDPSN YNNMWNNASV VNGAWLDPTN 300 NNVGSSLTSL I |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT1G28310 | |||||
AtGenExpress | AT1G28310 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G28310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G28310 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC021044 | 0.0 | AC021044.5 Arabidopsis thaliana chromosome I BAC F3H9 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001031100.2 | 0.0 | Dof-type zinc finger DNA-binding family protein | ||||
Refseq | NP_174152.3 | 0.0 | Dof-type zinc finger DNA-binding family protein | ||||
Swissprot | Q9FZA4 | 0.0 | DOF14_ARATH; Dof zinc finger protein DOF1.4 | ||||
TrEMBL | A0A178W100 | 0.0 | A0A178W100_ARATH; Uncharacterized protein | ||||
TrEMBL | A0A384K8E7 | 0.0 | A0A384K8E7_ARATH; Uncharacterized protein | ||||
TrEMBL | C0SUX9 | 0.0 | C0SUX9_ARATH; Uncharacterized protein At1g28310 (Fragment) | ||||
TrEMBL | Q2V4K7 | 0.0 | Q2V4K7_ARATH; Dof-type zinc finger DNA-binding family protein | ||||
STRING | AT1G28310.2 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT1G28310.1 |
Entrez Gene | 839725 |
iHOP | AT1G28310 |
wikigenes | AT1G28310 |
Publications ? help Back to Top | |||
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