PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G17460.2 | ||||||||
Common Name | TRFL3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 624aa MW: 69192.6 Da PI: 6.1403 | ||||||||
Description | TRF-like 3 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28 | 5.2e-09 | 518 | 565 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +WT E e+lv++v ++G g W+ I + ++Rt ++k++w+++ AT1G17460.2 518 AWTISEVEKLVEGVSKYGVGKWTEIKKLSFspyTHRTTVDLKDKWRNL 565 7*************************999899**************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.287 | 511 | 570 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.87E-15 | 513 | 567 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.6E-12 | 513 | 568 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-7 | 515 | 568 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 8.79E-22 | 517 | 567 | No hit | No description |
Pfam | PF00249 | 2.2E-6 | 518 | 565 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0031627 | Biological Process | telomeric loop formation | ||||
GO:0000783 | Cellular Component | nuclear telomere cap complex | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 624 aa Download sequence Send to blast |
MFGNVKDYGE TFQDSIFQTR NGSLSSTNQI GNPVTYKLVR VAGDGSLVPA TDEEMLEVKN 60 LLEKNEQDMP VLPDPIQTEE YIPDEGSPSQ FLQLENFEGK TYCIHAKTDR ISLGLHDKGF 120 FQSETAGPYT ENLNSRHESK EELMNGSQML FVLPDTKFQI STELSGNVEL VPSKVLLQEP 180 ILFSSNGCSI NQSTDVLNAT ASPKEPALST AASKPDFSRV PGEISLANLS IKELQETFRA 240 TFGRETTSKD KRWLKRRIKM GLINSCVVPT TTLTINDSKL IGGDQDAIDA FSKGTVDEET 300 ATESIDTPAS PDGIKGHSND FGHSPVETFV DHYSGNEDFE GEDGSAKRVR KPTRRYIEET 360 NEKQQIDGSM IPSKDPSSIQ AVSSEGRVVV TRMVSLAGSR IQVPYVSHVR RSRPRENIMA 420 LGEFRSKSWE VKAAPEEGNL NLSPPQLSND VNRVPGVKSA SRCVQKESDK DHLKPIFTDV 480 DQEMMEPELL DSSGDSSDDN FVDAPITQSA SGRKLHRAWT ISEVEKLVEG VSKYGVGKWT 540 EIKKLSFSPY THRTTVDLKD KWRNLQKASS SNRMEGGLKK HGSMAIPTHI MLQVRELAQK 600 QSPISRVVSK ARVVKRSRSR NGFL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 614 | 619 | KRSRSR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.41833 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 261086_at | 0.0 | ||||
Expression Atlas | AT1G17460 | - | ||||
AtGenExpress | AT1G17460 | - | ||||
ATTED-II | AT1G17460 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Arabidopsis thaliana myb family transcription factor (At1g17460) |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G17460.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G17460 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY080665 | 0.0 | AY080665.1 Arabidopsis thaliana unknown protein (At1g17460) mRNA, complete cds. | |||
GenBank | AY122966 | 0.0 | AY122966.1 Arabidopsis thaliana unknown protein (At1g17460) mRNA, complete cds. | |||
GenBank | AY519537 | 0.0 | AY519537.1 Arabidopsis thaliana MYB transcription factor (At1g17460) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001185023.1 | 0.0 | TRF-like 3 | ||||
TrEMBL | F4I7K3 | 0.0 | F4I7K3_ARATH; TRF-like 3 | ||||
STRING | AT1G17460.2 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4364 | 26 | 49 | Representative plant | OGRP1645 | 15 | 36 |
Link Out ? help Back to Top | |
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Phytozome | AT1G17460.2 |
Entrez Gene | 838319 |
iHOP | AT1G17460 |
wikigenes | AT1G17460 |