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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
AT1G07530.1 |
Common Name | ATGRAS2, F22G5.9, GRAS2, SCL14 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
GRAS |
Protein Properties |
Length: 769aa MW: 85929 Da PI: 5.6461 |
Description |
SCARECROW-like 14 |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 376.4 | 3.5e-115 | 393 | 764 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98
l++lL+ cA+avs +d + a+++L +++e++sp g+ +Rla+yf++ L+arla++++++y al++++ts ++ l+a++++ v+P+ k + + a
AT1G07530.1 393 LRTLLVLCAQAVSVDDRRTANEMLRQIREHSSPLGNGSERLAHYFANSLEARLAGTGTQIYTALSSKKTS---AADMLKAYQTYMSVCPFKKAAIIFA 487
5789**************************************************************9999...9************************ PP
GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
N+ +++ +++++++HiiDf+is+G+QWpaL++ L+ sRp+g+p+lRiTg++ p+ g +e ++etg+rLa+++++ +vpfe+n+ +a+++e++++e+
AT1G07530.1 488 NHSMMRFTANANTIHIIDFGISYGFQWPALIHRLSlSRPGGSPKLRITGIELPQRGfrPAEGVQETGHRLARYCQRHNVPFEYNA-IAQKWETIQVED 584
***********************************9******************99*****************************.7*********** PP
GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
L++++gE ++Vn+ ++ +llde+v ++s+rd+vLkl+++++P+v++ + ++n++ F++rf eal +ysa+fd+ ++kl+re+e r ++E+e+ g
AT1G07530.1 585 LKLRQGEYVVVNSLFRFRNLLDETVLVNSPRDAVLKLIRKINPNVFIPAILSGNYNAPFFVTRFREALFHYSAVFDMCDSKLAREDEMRLMYEKEFYG 682
************************************************************************************************** PP
GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
reivnvvaceg+er+er et+++W++rl +aGF+++pl+++ +++ kl +++ +++ + v+++ ++l++gWk+r +++ S W
AT1G07530.1 683 REIVNVVACEGTERVERPETYKQWQARLIRAGFRQLPLEKELMQNLKLKIENGYDKNFDVDQNGNWLLQGWKGRIVYASSLW 764
******************************************************999************************* PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009410 | Biological Process | response to xenobiotic stimulus |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0005829 | Cellular Component | cytosol |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 769 aa
Download sequence Send
to blast |
MGSYPDGFPG SMDELDFNKD FDLPPSSNQT LGLANGFYLD DLDFSSLDPP EAYPSQNNNN 60 NNINNKAVAG DLLSSSSDDA DFSDSVLKYI SQVLMEEDME EKPCMFHDAL ALQAAEKSLY 120 EALGEKYPSS SSASSVDHPE RLASDSPDGS CSGGAFSDYA STTTTTSSDS HWSVDGLENR 180 PSWLHTPMPS NFVFQSTSRS NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG 240 VEEASKFLPK SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL 300 TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI LNQNFPTESA 360 KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC AQAVSVDDRR TANEMLRQIR 420 EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK 480 KAAIIFANHS MMRFTANANT IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP 540 QRGFRPAEGV QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR 600 FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE ALFHYSAVFD 660 MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP ETYKQWQARL IRAGFRQLPL 720 EKELMQNLKL KIENGYDKNF DVDQNGNWLL QGWKGRIVYA SSLWVPSSS
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help
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Source |
Description |
TAIR | Encodes a member of the GRAS family of transcription factors. The protein interacts with the TGA2 transcription factor and affects the transcription of stress-responsive genes. The protein is found in the nucleus and is also exported to the cytoplasm. |
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Function -- GeneRIF ? help
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- SCL14 interacts with class II TGA transcription factors and increases tolerance to toxic doses of xenobiotics.
[PMID: 18984675]
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC022464 | 0.0 | AC022464.4 Genomic sequence for Arabidopsis thaliana BAC F22G5 from chromosome I, complete sequence. |
GenBank | AK316793 | 0.0 | AK316793.1 Arabidopsis thaliana AT1G07530 mRNA, complete cds, clone: RAFL05-11-B19. |
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Publications
? help Back to Top |
- Pysh LD,Wysocka-Diller JW,Camilleri C,Bouchez D,Benfey PN
The GRAS gene family in Arabidopsis: sequence characterization and basic expression analysis of the SCARECROW-LIKE genes. Plant J., 1999. 18(1): p. 111-9 [PMID:10341448] - Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] - Bolle C
The role of GRAS proteins in plant signal transduction and development. Planta, 2004. 218(5): p. 683-92 [PMID:14760535] - Tian C,Wan P,Sun S,Li J,Chen M
Genome-wide analysis of the GRAS gene family in rice and Arabidopsis. Plant Mol. Biol., 2004. 54(4): p. 519-32 [PMID:15316287] - Gao MJ,Parkin I,Lydiate D,Hannoufa A
An auxin-responsive SCARECROW-like transcriptional activator interacts with histone deacetylase. Plant Mol. Biol., 2004. 55(3): p. 417-31 [PMID:15604690] - Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Pischke MS,Huttlin EL,Hegeman AD,Sussman MR
A transcriptome-based characterization of habituation in plant tissue culture. Plant Physiol., 2006. 140(4): p. 1255-78 [PMID:16489130] - Juenger TE, et al.
Natural genetic variation in whole-genome expression in Arabidopsis thaliana: the impact of physiological QTL introgression. Mol. Ecol., 2006. 15(5): p. 1351-65 [PMID:16626458] - Popescu SC, et al.
Differential binding of calmodulin-related proteins to their targets revealed through high-density Arabidopsis protein microarrays. Proc. Natl. Acad. Sci. U.S.A., 2007. 104(11): p. 4730-5 [PMID:17360592] - Lee MH, et al.
Large-scale analysis of the GRAS gene family in Arabidopsis thaliana. Plant Mol. Biol., 2008. 67(6): p. 659-70 [PMID:18500650] - Ascencio-Ib
Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. Plant Physiol., 2008. 148(1): p. 436-54 [PMID:18650403] - Fode B,Siemsen T,Thurow C,Weigel R,Gatz C
The Arabidopsis GRAS protein SCL14 interacts with class II TGA transcription factors and is essential for the activation of stress-inducible promoters. Plant Cell, 2008. 20(11): p. 3122-35 [PMID:18984675] - Matthes MC, et al.
The transcriptome of cis-jasmone-induced resistance in Arabidopsis thaliana and its role in indirect defence. Planta, 2010. 232(5): p. 1163-80 [PMID:20711606]
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