PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01085364.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 171aa    MW: 18849.2 Da    PI: 7.91
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01085364.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000255678123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C +C+k+F ++  L  H++ H
  AMDW01085364.1_FGP001 56 FSCCYCPKRFQSSQALGGHQNAH 78
                           89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.77E-55582No hitNo description
PROSITE profilePS5015710.2015683IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
ESRVKQPVAS LLPPSDHLFM PFVGAPEFMG EQMDNEELNL SLSLQPSYPS RFLTEFSCCY  60
CPKRFQSSQA LGGHQNAHKL QRNLAKRNRE AFLSISQRKD ANAGIKDGSS ALSAESICKI  120
SSGKKHHKEA WQVMQGSCGS SSSGTVMHKS IEQDVEDNYL SNGTIDLSLK L
Cis-element ? help Back to Top
SourceLink
PlantRegMapAMDW01085364.1_FGP001
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0058830.0AP005883.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0435E12.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0CM331e-106A0A0E0CM33_9ORYZ; Uncharacterized protein
TrEMBLQ6YU061e-106Q6YU06_ORYSJ; Uncharacterized protein P0435E12.40
STRINGOMERI02G19670.11e-107(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69922646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.14e-15zinc finger protein 2