PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013985-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NF-X1
Protein Properties Length: 1113aa    MW: 121011 Da    PI: 8.1167
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013985-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X119.81.7e-06308326119
         zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                      CG+H C+++CH GpC pC+
  AHYPO_013985-RA 308 CGRHWCEQICHVGPCEPCR 326
                      ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578507.42E-7134200No hitNo description
PROSITE profilePS500168.582138199IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590141196IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.435141197IPR001841Zinc finger, RING-type
CDDcd060086.41E-5230291No hitNo description
SMARTSM004380.061253271IPR000967Zinc finger, NF-X1-type
PfamPF0142244255270IPR000967Zinc finger, NF-X1-type
CDDcd060087.09E-11298346No hitNo description
SMARTSM004389.3E-4308327IPR000967Zinc finger, NF-X1-type
PfamPF014221.2E-5308326IPR000967Zinc finger, NF-X1-type
CDDcd060084.42E-8362404No hitNo description
PfamPF014220.73366389IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0061372391IPR000967Zinc finger, NF-X1-type
CDDcd060088.18E-11420468No hitNo description
SMARTSM004380.62430449IPR000967Zinc finger, NF-X1-type
PfamPF014220.38430448IPR000967Zinc finger, NF-X1-type
PfamPF0142218488499IPR000967Zinc finger, NF-X1-type
CDDcd060082.67E-8516568No hitNo description
SMARTSM004381526545IPR000967Zinc finger, NF-X1-type
PfamPF014220.082526543IPR000967Zinc finger, NF-X1-type
CDDcd060087.10E-5573621No hitNo description
SMARTSM004380.06583601IPR000967Zinc finger, NF-X1-type
PfamPF0142234583600IPR000967Zinc finger, NF-X1-type
PfamPF01422110630654IPR000967Zinc finger, NF-X1-type
SMARTSM004388.2636656IPR000967Zinc finger, NF-X1-type
CDDcd060082.93E-5665714No hitNo description
PfamPF014227.3669695IPR000967Zinc finger, NF-X1-type
SMARTSM004380.039676697IPR000967Zinc finger, NF-X1-type
PfamPF014241.6E-4807872IPR001374R3H domain
Gene3DG3DSA:3.30.70.3308.6E-4920965IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1113 aa     Download sequence    Send to blast
MSSRAQNDGG DRPKFFGQSS RQQWVPKGPG ILSSPPASFN ENTGGYSGDG NGRSEKLDNR  60
RGRGFRGGSG SGGNGGRSYM GRPQHLRRGK NEMREGSGEG GIVNRDRSNN KRKGGGNGVD  120
ADLPQLVQEI QVKLSRGIVE CMICYDMVRR TAPIWSCSSC YSIFHLNCIK KWARAPTSID  180
TSAGKSQGFN WRCPGCQAVQ LTASKDIRYV CFCGKRHDPE SDFYLTPHSC GEPCGKPLEE  240
EVIGAGLSKE VMCPHVCVLH CHPGPCPPCK AFAPPRPCPC GKKVITTRCS ERKSVHTCGM  300
VCNKILECGR HWCEQICHVG PCEPCRVSMD ASCFCKKKSE MVICGDMSLK GEIRVENGVF  360
SCSSSCGKKL GCENHHCTEI CHPGPCGECE FLPSKLKTCY CGKTPIGDQR RSCLDPIPTC  420
SGTCEKLLPC GKHYCKDKCH SELCPHCTEI VTQKCRCGST SRTVECYKTT LASETFVCDR  480
PCGHKKNCGR HRCSERCCPL SDSSSTVSDG GNPHFCSMPC GKKLKCGQHS CEAFCHCGHC  540
PPCLETIFTD LTCACGRTSI PPPLPCGTPL PSCQYPCSVS QPCGHQSTHS CHFGDCPPCS  600
IPVMKECIGG HVVLRNVPCG SKEIICNKLC GKPRRCRLHA CARSCHLSPC DLSCEPSDPS  660
EKPSCGQVCG APRRDCRHTC QAPCHPLAPC PDLRCEFLVT ISCSCGRITT MVPCDSGGNT  720
STFNAYAFEA SLFQKLPAPL QPVQANETRV PLSHRKLMCD DECAKLEKKR VLADAFDISQ  780
PSIDALHFGD NPNASQVLSE LLRRDPKWVL AVEERCKHLV LGKNRGGSSK IKVHVFCPMM  840
KEKRDAIRLI AERWKLFISA AGWEPKRFIV VHATAKSKAP PRILAPKGSA AVVALHPPVF  900
DPMVDMNPRL VVALLDLPSE ADISTLVLRF GGECELVWLN DKNALAVFSE AARAATAMRR  960
LDNGSVYHGA AVVQQSSAAT DAAPAPTWAG TTPSALRSNP WKKASTWAED TWGEEEWTSG  1020
NVSNDVRPSS SWKGRDVPPT TTMNRWTVLN PGSSSLRTTE STTRVIDNSK TRAAVESTSG  1080
SEACSEVKTE PQHDDNAEVV DDWEKAFDKV TL*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021726725.10.0NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A0J8E6T70.0A0A0J8E6T7_BETVU; Uncharacterized protein
STRINGXP_010693736.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1