PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC214168.3_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | E2F/DP | ||||||||
Protein Properties | Length: 346aa MW: 39283.1 Da PI: 9.9387 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 42.5 | 1e-13 | 109 | 139 | 39 | 71 |
E2F_TDP 39 vknkrRRiYDilNVLealnliekkekneirwkg 71 v ++RR YDi+NVLe+++li+kk kn+i wkg AC214168.3_FGP001 109 V--RKRRMYDITNVLEGIGLIKKKLKNRICWKG 139 5..89**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01372 | 7.0E-6 | 44 | 139 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.18E-10 | 98 | 140 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.7E-13 | 107 | 140 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 7.8E-12 | 108 | 139 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14660 | 2.78E-31 | 149 | 227 | No hit | No description |
SuperFamily | SSF144074 | 1.05E-22 | 151 | 227 | No hit | No description |
Pfam | PF16421 | 7.7E-21 | 155 | 235 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MAHMIKNQFI PYLSFCWNKQ YRKSRLESFA ESGRKAPYGE YDTAESTGWS IVSSGFIHGV 60 DSPRKTPISG KTARKYKPKS ERTKAAPQAA TLNAGKFTWQ PTYSCWLSVR KRRMYDITNV 120 LEGIGLIKKK LKNRICWKGL GELGTNLDND LSVLKIDFEN LNLQEQALDE HISKIREKLK 180 DLTEDEGNQR WLFLTEDDIK GLPCFQNKTL IAIKAPHGSS LEVPNPDVLV AGKSKLSDIH 240 PYYIVSKTEE EMEGKLDDAA APAGHTNVAK HGSIKCPRTK RAWQRSRKEE VVPKAQKIQK 300 TPDLNAPCHS EGVLRKINPS DVEYLYKVKL RHSIIITHQL TENIKP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 109 | 131 | RKRRMYDITNVLEGIGLIKKKLK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC214168.3_FG001 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC214168.3_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU949055 | 0.0 | EU949055.1 Zea mays clone 394824 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021319035.1 | 1e-139 | transcription factor E2FA isoform X2 | ||||
TrEMBL | A0A1D6EBF1 | 1e-139 | A0A1D6EBF1_MAIZE; Transcription factor E2FB | ||||
STRING | AC214168.3_FGP001 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP625 | 37 | 148 | Representative plant | OGRP1225 | 17 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36010.1 | 6e-47 | E2F transcription factor 3 |
Link Out ? help Back to Top | |
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Phytozome | AC214168.3_FGP001 |