PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC201740.3_FGP003 | ||||||||
Common Name | LOC103638984, ZEAMMB73_653740 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 131aa MW: 14511.3 Da PI: 7.0435 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.9 | 7.5e-05 | 32 | 52 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cg+ F ++ L H++ H AC201740.3_FGP003 32 CTYCGRKFCTSQALGGHQNAH 52 ******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.06E-6 | 23 | 71 | No hit | No description |
PROSITE profile | PS50157 | 11.614 | 30 | 57 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 32 | 52 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MEREPEQELD LELTLLPSAW ATQEEAPGFF LCTYCGRKFC TSQALGGHQN AHKYERALAK 60 RRRDIAAALR KHGAPVTRDG QVHAGASPSA RATAGSERGR RPVDELQLQG VPVPWLHQVE 120 RTEELDLSLG L |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.124778 | 1e-129 | root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC201740.3_FG003 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC201740.3_FGP003 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU960065 | 1e-127 | EU960065.1 Zea mays clone 221533 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002465203.1 | 3e-44 | zinc finger protein 2 | ||||
TrEMBL | A0A3L6DGC7 | 3e-84 | A0A3L6DGC7_MAIZE; Zinc finger protein 2 | ||||
STRING | AC201740.3_FGP003 | 2e-91 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP183 | 36 | 274 | Representative plant | OGRP82 | 15 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01860.1 | 9e-16 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | AC201740.3_FGP003 |
Entrez Gene | 103638984 |