PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC187157.4_FGP005
Common NameLOC103634943, ZEAMMB73_653037, Zm.64451
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 858aa    MW: 92028.4 Da    PI: 5.929
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC187157.4_FGP005genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.35.3e-181876357
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       k  ++t+eq+e+Le+l++++++ps  +r++L + +    +++ +q+kvWFqNrR +ek+
  AC187157.4_FGP005 18 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRDCpvlaSVDPKQIKVWFQNRRCREKQ 76
                       6789*****************************************************97 PP
2START170.79.8e-541653722204
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v m++a  v+e+l+d++ W ++++++e+++v+  g  g++
  AC187157.4_FGP005 165 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCPGVAARACGLVGMEPA-KVAEVLKDRPLWLRDCRSMEVVNVLPAGtsGTV 255
                        789*******************************************************.9999999999*********************** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l +++l+a+++l+p Rdf+ +Ry+  l +g++v++++S+  +q  p+    +++vR+e+lpSg+l++p+++g+s +++v+h+dl+ +++++
  AC187157.4_FGP005 256 ELLYMQLYAPTTLAPaRDFWLLRYTSILDDGSLVVCERSLGANQGGPSmplVQPFVRGEMLPSGFLVRPSDGGGSVIHIVDHMDLEPWSVPE 347
                        ***********************************************999999*************************************** PP

                        HHHHHHHHHHHHHHHHHHHHTXXXX CS
              START 180 llrslvksglaegaktwvatlqrqc 204
                        ++r+l++s+++ ++k+ +a+l++++
  AC187157.4_FGP005 348 VVRPLYESSAMVAQKMSMAALRYLR 372
                        *********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.1921377IPR001356Homeobox domain
SMARTSM003891.0E-141581IPR001356Homeobox domain
PfamPF000461.3E-151876IPR001356Homeobox domain
CDDcd000861.09E-141878No hitNo description
SuperFamilySSF466892.48E-161979IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-172076IPR009057Homeodomain-like
CDDcd146862.44E-670109No hitNo description
PROSITE profilePS5084825.437155383IPR002913START domain
CDDcd088751.14E-71159373No hitNo description
Gene3DG3DSA:3.30.530.202.9E-22162369IPR023393START-like domain
SuperFamilySSF559615.22E-37164375No hitNo description
SMARTSM002349.6E-44164374IPR002913START domain
PfamPF018522.1E-51165372IPR002913START domain
PfamPF086701.0E-47712857IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 858 aa     Download sequence    Send to blast
MVTAKEAAAA AAAMDASKYV RYTPEQVEAL ERLYYECPKP SSLRRQQLVR DCPVLASVDP  60
KQIKVWFQNR RCREKQRKES SRLQAVNRKL TAMNKLLMEE NDRLQKQVSQ LVYENGYYRQ  120
QTQSAGLATT DTSCESVVTS GPQNVAAVLP QAQPRDAGPA GLMSIAEETL TEFLSKATGT  180
AVEWVQMPGM KPGPDSIGII AISHGCPGVA ARACGLVGME PAKVAEVLKD RPLWLRDCRS  240
MEVVNVLPAG TSGTVELLYM QLYAPTTLAP ARDFWLLRYT SILDDGSLVV CERSLGANQG  300
GPSMPLVQPF VRGEMLPSGF LVRPSDGGGS VIHIVDHMDL EPWSVPEVVR PLYESSAMVA  360
QKMSMAALRY LRQVAHEDTA HSVVTGGWGR QPASLRALSQ KLTRGFNEAL NGLADDGWSV  420
VGSDGVDDVC VSVSSSPSRV VSCNATFSNG PVVGTGSSSV LCAKASMLLQ DVSPPELLRF  480
MREQRSQWAD SNLDAFFASA MKPDFCSLPI PPRLGGFGGQ VILPLAHTFD PEEFLEVIKV  540
GNAGNYQDAL LHRDLFLLQM YNGVDENMAG TCSELIFAPI DASFSDDSPL LPSGFRIIPI  600
DAPLDTSSPK CTLDLASTLE AGTPRSRTSG SGGPGTAAAA CAGSKAVMTI VFQFAFESHL  660
QDSVAAMARQ YVRSIVASVQ RIALALSSAR LVVPHGSGVS HGAPAAGPEA ATLARWICQS  720
YRFHFGAELI KSADGSGCGE AVLKTLWHHA GAILCCSLKA LPVFTFANQS GLDMLETTLV  780
ALQDIALERV FDDQGRKNLC AELPGVMEQG FACVPGGMCV SGLGRPVSYE KALAWKVLDD  840
GSGGVHCVCF MFVNWSFV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.644510.0cell culture| ear
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC187157.4_FG005
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems and leaf blades. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC187157.4_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008655743.10.0homeobox-leucine zipper protein HOX29
SwissprotA2WLR50.0HOX29_ORYSI; Homeobox-leucine zipper protein HOX29
TrEMBLQ147T10.0Q147T1_MAIZE; Class III HD-Zip III protein HB8
STRINGAC187157.4_FGP0050.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Prigge MJ,Clark SE
    Evolution of the class III HD-Zip gene family in land plants.
    Evol. Dev., 2006 Jul-Aug. 8(4): p. 350-61
    [PMID:16805899]