PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AA96G00024 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 437aa MW: 48942.3 Da PI: 5.699 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.6 | 1.5e-39 | 118 | 178 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+ss AA96G00024 118 PTKILSCPRCKSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNSS 178 67899*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-30 | 115 | 175 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.8E-32 | 120 | 176 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.444 | 122 | 176 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 124 | 160 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 437 aa Download sequence Send to blast |
MESRDPAIKL FGMKIPFPAA FESEVEVEEE EEMEMEMEWS GGEDISLDEE VTEEQETPKL 60 SDNNSPNNSD NSKSKAGDES ITISTDQIET NDSLEKQHQQ QEEEATGTVT DGKTLKKPTK 120 ILSCPRCKSM DTKFCYYNNY NINQPRHFCK ACQRYWTAGG TMRNVPVGAG RRKNKNSSSH 180 YRHITISEAL EAARLDPGIQ TNSRVLCFNV DTQQQQQQAA PKQKVSNGFI EQHRLVTNAD 240 DCSSNSSITT SNNHSIDESR TQNCRVLEPP QINNGFACIP GVPWPYTWNP TMPPPPGFYP 300 PPGYPMPFYP YWTIPMLSSP QSSQKGSTPN SPTLGKHMRD DESAKTENDT QRKQRNGTTN 360 GTVLVPKTLR IDDPSEAAKS SIWTTLGIKN EMMSKGGMFK GFDEKTKKNS HEKTENSPVL 420 SANPAALSRS VNFHERI |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00394 | DAP | Transfer from AT3G47500 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AA96G00024 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269|PubMed:19619493}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002877565.1 | 0.0 | cyclic dof factor 3 | ||||
Swissprot | Q8LFV3 | 0.0 | CDF3_ARATH; Cyclic dof factor 3 | ||||
TrEMBL | A0A1J3G945 | 0.0 | A0A1J3G945_NOCCA; Cyclic dof factor 3 | ||||
STRING | Bostr.18473s0221.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5441 | 28 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G47500.1 | 1e-146 | cycling DOF factor 3 |
Publications ? help Back to Top | |||
---|---|---|---|
|