PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA8G00012 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | AP2 | ||||||||
Protein Properties | Length: 226aa MW: 24906.6 Da PI: 6.8938 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.5 | 4e-14 | 72 | 119 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 s+y+GV+ +k grW+A++ + +k+++lg f+t+ eAa+a+++a+ + AA8G00012 72 SKYRGVTLHK-CGRWEARLGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIR 119 89********.7******5553..1.26**********99*********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 7.9E-5 | 2 | 43 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 8.887 | 10 | 37 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-8 | 10 | 37 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-5 | 10 | 38 | IPR016177 | DNA-binding domain |
SuperFamily | SSF54171 | 7.19E-17 | 72 | 131 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.6E-9 | 72 | 119 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.31E-25 | 72 | 130 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.7E-16 | 73 | 130 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.633 | 73 | 130 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-29 | 73 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-6 | 74 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-6 | 112 | 132 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MQGLWKASGF DTAHAAARAY DRAAIKFRGV DADINFDIED YVQDVKQMGN LTKEEFMHVL 60 RRQSTGFPRG SSKYRGVTLH KCGRWEARLG QFLGKKYVYL GLFDTEIEAA RAYDKAAIRS 120 NGKDAVTNFD PKVYDEDLSP DKTLNDHNLD LSLGESTSDE IGTRSENPSG SNNKNGLLGS 180 DLSLTVGSEK QSDGSGRRPV MVTTAAASSG FSPHHYTPYT IHFSNP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). May regulate negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA8G00012 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006393916.2 | 1e-106 | AP2-like ethylene-responsive transcription factor TOE3 | ||||
Swissprot | Q9FH95 | 5e-97 | TOE3_ARATH; AP2-like ethylene-responsive transcription factor TOE3 | ||||
TrEMBL | A0A078FIK1 | 1e-102 | A0A078FIK1_BRANA; BnaC07g16190D protein | ||||
TrEMBL | A0A0D3D883 | 1e-102 | A0A0D3D883_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6E078 | 1e-102 | A0A3P6E078_BRAOL; Uncharacterized protein | ||||
STRING | Bostr.0568s0140.1.p | 1e-103 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2297 | 28 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67180.1 | 2e-98 | target of early activation tagged (EAT) 3 |
Publications ? help Back to Top | |||
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