PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA87G00308 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | bHLH | ||||||||
Protein Properties | Length: 242aa MW: 27212.7 Da PI: 8.2075 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.9 | 4.8e-10 | 87 | 134 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq AA87G00308 87 SHSLAERARREKISERMKFLQDLVPGC----NKITGKAVMLDEIINYVQSLQ 134 8**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.27E-16 | 81 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.49E-9 | 81 | 138 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.1E-17 | 83 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.618 | 83 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-7 | 87 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.5E-9 | 89 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MDPDSVSRPS KNKPNSRKRK SIPSPASSSL TASNSKISDQ NCASIAPKRS KKEANKNTDK 60 KDDDTKVPEP HKDYIHVRAR RGQATDSHSL AERARREKIS ERMKFLQDLV PGCNKITGKA 120 VMLDEIINYV QSLQTQVEFL AMKLATINPR FELNSNSILS TELTQCMYSE ERYSSGCLAI 180 DKNQLQLTSL STSMPSSDGF VQVPTLWEND LESIVQMGFG DSQHESLICT ERNVEMKLEL 240 ER |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 15 | 20 | SRKRKS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA87G00308 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006418851.1 | 6e-98 | transcription factor bHLH77 | ||||
Swissprot | Q9LK48 | 3e-92 | BH077_ARATH; Transcription factor bHLH77 | ||||
TrEMBL | V4L4R9 | 1e-96 | V4L4R9_EUTSA; Uncharacterized protein | ||||
STRING | XP_006418851.1 | 2e-97 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7406 | 20 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23690.1 | 4e-74 | bHLH family protein |
Publications ? help Back to Top | |||
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