PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA65G00358
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 284aa    MW: 31882.6 Da    PI: 8.3029
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA65G00358genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84.1e-05109128120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 ++C+ C+k+F+r  n++ H+
  AA65G00358 109 FSCSVCSKTFNRFNNMQMHM 128
                 89*****************9 PP
2zf-C2H213.10.00029197219123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C +C k+F  + + ++H +++
  AA65G00358 197 FRCRKCEKMFAVRGDWRTHEKNC 219
                 89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.28E-5102131No hitNo description
SMARTSM003550.29109131IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.201109136IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.2E-5109128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
SMARTSM00355170160192IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.24E-6178217No hitNo description
Gene3DG3DSA:3.30.160.601.9E-4183217IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035552197217IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MHNQNFISGD GDDDSSVVLR LAPPGHNIKS TTNTKTTIKS SSKNDKFLNL QYLANPNYNN  60
NDDGVTVALH IGLTPATEKS AGGGEKIVTS QGQYWIPSMA QILVGPTQFS CSVCSKTFNR  120
FNNMQMHMWG HGSQYRKGPE SLRGSKSSSS SSSILKLPCY CCAEGCKNNI DHPRSKPLKD  180
FRTLQTHYKR KHGVKPFRCR KCEKMFAVRG DWRTHEKNCG KLWFCICGSD FKHKRSLKDH  240
VKAFGDGHGA HTLTDYVVAI NDDHDDDDEE QDGNDDDDYF RCYG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA65G00358
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020870727.11e-129zinc finger protein WIP6
SwissprotQ9FX681e-129ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A087HN921e-128A0A087HN92_ARAAL; Uncharacterized protein
STRINGA0A087HN921e-129(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-119C2H2-like zinc finger protein