PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA54G00226 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | NAC | ||||||||
Protein Properties | Length: 348aa MW: 40527.6 Da PI: 6.7816 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.6 | 7.1e-51 | 24 | 152 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +ppGfrFhPt+eel+++yL+kkv ++k++l +vi+evd++k+ePwdL++ ++ + +++wyfFs++dkky+tg+r+nrat +g+Wkatg+dk ++s AA54G00226 24 VPPGFRFHPTEEELLHYYLRKKVYSQKIDL-DVIREVDLNKLEPWDLQEecRIGStPQNDWYFFSHKDKKYPTGTRTNRATLTGFWKATGRDKIICS-C 120 69****************************.9***************963433332456**********************************9999.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 + +gl+ktLvfykgrap+g+k+dW+mheyrl AA54G00226 121 VRRIGLRKTLVFYKGRAPHGQKSDWIMHEYRL 152 999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-56 | 20 | 187 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.264 | 24 | 187 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-26 | 25 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009809 | Biological Process | lignin biosynthetic process | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MAEIKNDNKN KKKVNLCING QSKVPPGFRF HPTEEELLHY YLRKKVYSQK IDLDVIREVD 60 LNKLEPWDLQ EECRIGSTPQ NDWYFFSHKD KKYPTGTRTN RATLTGFWKA TGRDKIICSC 120 VRRIGLRKTL VFYKGRAPHG QKSDWIMHEY RLDDNSITPT SNETDVITED SMNYNEEGWV 180 ICRVFKKKNY QKIDDSPKIT LSSSVDNLYT EVEEKTPQNG TVLDHILLYM DRTGSSNICK 240 PENQTFLTTN ITQPQDDILF KMPPMIDQTL ISQNRFNSSP VQEKRTGGPA GITNWANLDR 300 FVAWQLNNCH KRLCDGENFD EEEDNIDIWR HLTNDSSSSL DPFLHFSV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-49 | 24 | 189 | 15 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening and lignification of sclerenchymatous fibers and secondary xylem vessels (tracheary elements). Seems to repress the secondary cell wall thickening of xylary fibers. May also regulate the secondary cell wall lignification of other tissues. Binds to and activates the promoter of MYB46. {ECO:0000269|PubMed:17114348, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:17890373}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00016 | PBM | Transfer from AT1G32770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA54G00226 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002893740.1 | 1e-168 | NAC domain-containing protein 12 | ||||
Swissprot | Q9LPI7 | 1e-165 | NAC12_ARATH; NAC domain-containing protein 12 | ||||
TrEMBL | A0A087HSC3 | 1e-167 | A0A087HSC3_ARAAL; Uncharacterized protein | ||||
TrEMBL | D7KIC6 | 1e-167 | D7KIC6_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pm.C_scaffold_1002619 | 1e-168 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM778 | 28 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32770.1 | 1e-158 | NAC domain containing protein 12 |