PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA50G00062

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

Trihelix

Protein Properties

Length: 293aa MW: 34720.7 Da PI: 4.5276

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA50G00062	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47	6.5e-15	55	139	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt+qe L+e+ ++ +++r++l+ +W ev++k+ +e +e+s +qC+ ++nl+++y+k+k ++k + ss++++f++++ AA50G00062 55 WTEQEAFMLLEIWGDRFLQSGRRSLRNDDWNEVAEKVsEELRIEKSETQCRRMMDNLKRKYRKEKIKMEK-SGLGSSKWSFFNKMD 139 ***********************************788899******************88887.479999******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.4E-21	54	141	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MYNRPLTKRH AYYHEEDEED ELEEYEMNHK KQKQSKPVSG YECAGPSDAK LAYDWTEQEA 60 FMLLEIWGDR FLQSGRRSLR NDDWNEVAEK VSEELRIEKS ETQCRRMMDN LKRKYRKEKI 120 KMEKSGLGSS KWSFFNKMDM LLGFSPKSDL GLACGVDSGE FVFMNSKIYL VKSNGFDEMM 180 DSPGDSEEEE EENVEVDYRR RKLSDSGSYM LLVNSVERFG KIYEKMEKSK KEQMREMEKM 240 RSDFQKDLEL QKKQILGRAQ VEIARLRRQE NDDDEESEDE EMDNDSGLDL SDE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA50G00062

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006418742.1	1e-138	trihelix transcription factor ASIL2
TrEMBL	A0A087HCA4	1e-152	A0A087HCA4_ARAAL; Uncharacterized protein
STRING	A0A087HCA4	1e-153	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9779	27	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-134	Trihelix family protein