PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA4G00251

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

bZIP

Protein Properties

Length: 581aa MW: 66348.1 Da PI: 7.303

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA4G00251	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.8	7.4e-11	79	115	3	39
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 ++k +rr+++NReAAr+sR+RKka++++Le+ +L AA4G00251 79 PDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLI 115 6899**************************8655554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.8E-4	77	135	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.7E-8	79	110	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.772	79	121	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.41E-6	81	116	No hit	No description
CDD	cd14708	5.05E-21	81	132	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.5E-7	82	123	No hit	No description
PROSITE pattern	PS00036	0	84	99	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.6E-29	167	242	IPR025422	Transcription factor TGA like domain
Pfam	PF14144	5.9E-23	402	458	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence Send to blast
MNSTSTQFVA PRSVGIYEPM HQFVMWGDSF KGNGNMNMNS SNHFILQTNQ KLDNLSEDTS 60 HGTTGTHIFE QEASTPRNPD KIQRRLAQNR EAARKSRLRK KAYVQQLETS RLKLIQLEQE 120 LDRARQQGFY AGNGIESSSV GFSETMNPGI AAFEMEYGQW VEEQNRQICE LRTVLHGHIN 180 DIELRLLVDN AMKHYFDLFR MKSTAAKADV FFVMSGMWKT SAERFFLWIG GFRPSDLLKV 240 LLPHFDPITD QQLLDVCNLR QSCQQAEDAL SQGMDKLQYT LAESVAAGQL GDGNYIPQMA 300 SAMERLEALV SFVNQADHLR HETLQQMYRI LTTRQAARGL LALGEYFERL RALSSSWATR 360 HRVKESYSCS ISRNRRGTSS NRVSFAESHT CKLASHGLCS DLLFDNAMKH YFELFKMKST 420 AAKADVFFVM SGMWKSSAER FFLWIGGYRP SDLIKVLLPH LDPLNDQQLL DVCNLRESCQ 480 QAEDTLSHGM DKLQYTLAEN IAAEELGEGN YTPQVTSVME RFEVLVSFVN QADHLRHETL 540 QQMYRILTTR QAARGLLALG EYFQRLRSVS SSWETRHCGP T

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence Send to blast

MNSTSTQFVA PRSVGIYEPM HQFVMWGDSF KGNGNMNMNS SNHFILQTNQ KLDNLSEDTS  60
HGTTGTHIFE QEASTPRNPD KIQRRLAQNR EAARKSRLRK KAYVQQLETS RLKLIQLEQE  120
LDRARQQGFY AGNGIESSSV GFSETMNPGI AAFEMEYGQW VEEQNRQICE LRTVLHGHIN  180
DIELRLLVDN AMKHYFDLFR MKSTAAKADV FFVMSGMWKT SAERFFLWIG GFRPSDLLKV  240
LLPHFDPITD QQLLDVCNLR QSCQQAEDAL SQGMDKLQYT LAESVAAGQL GDGNYIPQMA  300
SAMERLEALV SFVNQADHLR HETLQQMYRI LTTRQAARGL LALGEYFERL RALSSSWATR  360
HRVKESYSCS ISRNRRGTSS NRVSFAESHT CKLASHGLCS DLLFDNAMKH YFELFKMKST  420
AAKADVFFVM SGMWKSSAER FFLWIGGYRP SDLIKVLLPH LDPLNDQQLL DVCNLRESCQ  480
QAEDTLSHGM DKLQYTLAEN IAAEELGEGN YTPQVTSVME RFEVLVSFVN QADHLRHETL  540
QQMYRILTTR QAARGLLALG EYFQRLRSVS SSWETRHCGP T

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA4G00251

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002864946.1	0.0	transcription factor TGA1
Refseq	XP_020868708.1	0.0	transcription factor TGA1
Swissprot	Q39237	0.0	TGA1_ARATH; Transcription factor TGA1
TrEMBL	D7MT94	0.0	D7MT94_ARALL; Predicted protein
STRING	Al_scaffold_0008_3070	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2976	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	0.0	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]