PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA4G00157

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

CAMTA

Protein Properties

Length: 1115aa MW: 124879 Da PI: 5.7294

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA4G00157	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	176.8	2.7e-55	19	161	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvgg....................... 77 l+e ++rwl++ ei++iL n++k+++++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKv+ AA4G00157 19 LSEaQNRWLRPAEICEILRNHQKFHIASEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVNVfnnlsalifsaepcdgcesyclv 118 45559*********************************************************************999***************** PP CG-1 78 ..vevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 ++vl+cyYah+e+n++fqrrcyw+Le++l +iv+vhylevk AA4G00157 119 gsIDVLHCYYAHGEDNENFQRRCYWMLEQDLMHIVFVHYLEVK 161 **************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	80.794	15	166	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	6.1E-76	18	161	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.8E-30	21	101	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.1E-14	118	160	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	6.7E-4	459	564	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	4.5E-4	486	560	IPR002909	IPT domain
SuperFamily	SSF81296	1.14E-14	486	572	IPR014756	Immunoglobulin E-set
PROSITE profile	PS50297	14.371	670	816	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	4.75E-14	671	735	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.5E-13	674	735	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.93E-9	682	814	No hit	No description
PROSITE profile	PS50088	9.351	687	719	IPR002110	Ankyrin repeat
Gene3D	G3DSA:1.25.40.20	1.5E-13	771	817	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	4.75E-14	771	816	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF52540	6.11E-8	925	978	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	1.1	928	950	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.95	929	958	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0022	930	949	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0092	951	973	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.304	952	976	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	4.9E-4	954	973	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0071275	Biological Process	cellular response to aluminum ion
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1115 aa Download sequence Send to blast
MADRGSFGFA PRLDIGQLLS EAQNRWLRPA EICEILRNHQ KFHIASEPPN RPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVNVFNNLS ALIFSAEPCD GCESYCLVGS 120 IDVLHCYYAH GEDNENFQRR CYWMLEQDLM HIVFVHYLEV KGNRMSAGGI KENNSNSLSG 180 NTSANYSTAT PSSILSPSCE DADSGDSHQA SSTLQAFPEP QIGASLLKHQ QNAGLMNSFD 240 TTSVWGNRDG WTSAIGMGDV SQAHGNRVRE SDSQRSVDVP AWDAAFDNSL TRYQNLPCND 300 PLTQIQPSSA GWMPMEGNTE KGSLLMAENL QNPLQNQLNW QIPVQNSLPL QKWPIDSLSR 360 MTDGTDLDNF EAFSGFLGSQ NQQPVGGNFQ TPNMEAVYIP KLDPEDPQYE ANTSQMLPLR 420 KSLLKKEDSL KKVDSFTRWV SKELGEMEDL QMQSSSGGIA WTSVECETAA AGSSLSPSLS 480 KDQRFTIIDF WPKWTQTDSD VEVMVIGTFL MSSQEVTSYN WSCMFGEVEV PADILVDGVL 540 CCHAPPHEAG QVPFYITCSD RFASSEVREF DFLPGSTKKL NTADIYGSST IELSLHLRLE 600 NLLTHRAVVH EHHIFEDIVE KRKKISKLML LKDEKDCLLP PVTTGKDSTE QEVKERLIRE 660 EFEDKLYLWL IHKVTEEGKG PNILDEEGQG VLHLAAALGY DWAIKPILAA GVSINFRDAN 720 GWSALHWAGF SGRQESQIYL PSISYDFGSS SLLFILTKIL KLNLVILKFQ TVAVLVSLGA 780 DAGALTDPSP EVPLGRTAAD LAYEYGHRGI SGFLAESSLT SYLEKLTVDT KETSSIDSFG 840 TKAVKTVAER TATPMSYGDV PERLSMKDSL DAVCNATQAA DRLHQVFRMQ SFQRKQLSEL 900 GDNGFDISDE LALSFAAAKT KKPGRNEGAH AAAVQIQKKY RGWKKRKEFL LIRQRIVKIQ 960 AHVRGHQVRK QYRAIIWSVG LLEKIILRWR RKGSGLRGFK RDTVPKPAEP VCPAPQEDDY 1020 DFLKDGRKQT EERLQKALTR VKSMVQYPEA RAQYRRLLTV VEGFRENEAS SSAMNNSNNN 1080 NSNNNTEEAG NYNDDDLIDI DSLLDDDTFM AVTFE

Sequence ? help Back to Top

Protein Sequence Length: 1115 aa Download sequence Send to blast

MADRGSFGFA PRLDIGQLLS EAQNRWLRPA EICEILRNHQ KFHIASEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVNVFNNLS ALIFSAEPCD GCESYCLVGS  120
IDVLHCYYAH GEDNENFQRR CYWMLEQDLM HIVFVHYLEV KGNRMSAGGI KENNSNSLSG  180
NTSANYSTAT PSSILSPSCE DADSGDSHQA SSTLQAFPEP QIGASLLKHQ QNAGLMNSFD  240
TTSVWGNRDG WTSAIGMGDV SQAHGNRVRE SDSQRSVDVP AWDAAFDNSL TRYQNLPCND  300
PLTQIQPSSA GWMPMEGNTE KGSLLMAENL QNPLQNQLNW QIPVQNSLPL QKWPIDSLSR  360
MTDGTDLDNF EAFSGFLGSQ NQQPVGGNFQ TPNMEAVYIP KLDPEDPQYE ANTSQMLPLR  420
KSLLKKEDSL KKVDSFTRWV SKELGEMEDL QMQSSSGGIA WTSVECETAA AGSSLSPSLS  480
KDQRFTIIDF WPKWTQTDSD VEVMVIGTFL MSSQEVTSYN WSCMFGEVEV PADILVDGVL  540
CCHAPPHEAG QVPFYITCSD RFASSEVREF DFLPGSTKKL NTADIYGSST IELSLHLRLE  600
NLLTHRAVVH EHHIFEDIVE KRKKISKLML LKDEKDCLLP PVTTGKDSTE QEVKERLIRE  660
EFEDKLYLWL IHKVTEEGKG PNILDEEGQG VLHLAAALGY DWAIKPILAA GVSINFRDAN  720
GWSALHWAGF SGRQESQIYL PSISYDFGSS SLLFILTKIL KLNLVILKFQ TVAVLVSLGA  780
DAGALTDPSP EVPLGRTAAD LAYEYGHRGI SGFLAESSLT SYLEKLTVDT KETSSIDSFG  840
TKAVKTVAER TATPMSYGDV PERLSMKDSL DAVCNATQAA DRLHQVFRMQ SFQRKQLSEL  900
GDNGFDISDE LALSFAAAKT KKPGRNEGAH AAAVQIQKKY RGWKKRKEFL LIRQRIVKIQ  960
AHVRGHQVRK QYRAIIWSVG LLEKIILRWR RKGSGLRGFK RDTVPKPAEP VCPAPQEDDY  1020
DFLKDGRKQT EERLQKALTR VKSMVQYPEA RAQYRRLLTV VEGFRENEAS SSAMNNSNNN  1080
NSNNNTEEAG NYNDDDLIDI DSLLDDDTFM AVTFE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00043	PBM	Transfer from AT5G64220	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA4G00157

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006279929.1	0.0	calmodulin-binding transcription activator 2 isoform X1
Swissprot	Q6NPP4	0.0	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	D7MR88	0.0	D7MR88_ARALL; Calmodulin-binding protein
STRING	Bostr.0568s0382.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4082	24	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]