PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA44G00691
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 374aa    MW: 41798.4 Da    PI: 8.9257
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA44G00691genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12.1e-10201246555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h + Er+RR+++N++f+ Lr llP       +K +K++iL  A + + sLq
  AA44G00691 201 HMISERKRREKLNESFQALRFLLPLG-----TKKDKVSILAIARDQLASLQ 246
                 8899********************97.....799*********99888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-14195262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.941196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.67E-10198250No hitNo description
Gene3DG3DSA:4.10.280.101.6E-12200265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-8201246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-10202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MNVEASLREW FPEDFNRKSS PVNSDYLRPP PPLQAPPSSS SSSLISLDSP NVSEYSPLLF  60
QKPSPDHAVN VTVNAPLIPI TTNMILPQQE MLFRNCQRDE EAMTQAILAV LTAPSSPPST  120
SSSPQDKVNP RGGGATAFKR YYGGISGGVM NVRKQSMMKR AILFYNRLNN IYQRERLGRE  180
NVSSGVGGSG SGGPTATQLH HMISERKRRE KLNESFQALR FLLPLGTKKD KVSILAIARD  240
QLASLQTEIS NLLEKNRELE AKVNADREME NDLRSEERFN VRIRSISEST SRERNVDLRV  300
IVRGENIRVD DLIIKLLEFL KQINNVSLVS IDTQTKEDGD SSVVLVGLRL KIEGEWDESA  360
FQEAVRRVVA DVAH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209ERKRRE
2205210RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA44G00691
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_200506.11e-149basic helix-loop-helix (bHLH) DNA-binding family protein
SwissprotQ9LTS41e-150BH041_ARATH; Putative transcription factor bHLH041
TrEMBLA0A1P8BAL11e-146A0A1P8BAL1_ARATH; Basic helix-loop-helix (BHLH) DNA-binding family protein
STRINGAT5G56960.11e-149(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-135bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]