PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA44G00210
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 400aa    MW: 44545.9 Da    PI: 4.8675
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA44G00210genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.21.4e-4861341129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 l+pGfrFhPtd elv +yLk+kv gkkl + ++i+evdiyk+eP+dLp k  +++++ +w+fF++r++ky++g r++rat+sgyWk+tgk+++vl+ ++
  AA44G00210   6 LAPGFRFHPTDVELVRYYLKRKVMGKKLLA-DAIAEVDIYKFEPQDLPdKsYIRSGDLKWHFFCPRERKYSSGVRAKRATESGYWKTTGKERPVLC-NN 102
                 579************************988.89**************96346777888**************************************.99 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrle 129
                 e+vg  ktLv++ g++p+ge+tdWvmhey+le
  AA44G00210 103 EVVGKIKTLVYHLGKSPRGERTDWVMHEYKLE 134
                 9****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-573156IPR003441NAC domain
PROSITE profilePS5100553.2296156IPR003441NAC domain
PfamPF023651.7E-258133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MGKTHLAPGF RFHPTDVELV RYYLKRKVMG KKLLADAIAE VDIYKFEPQD LPDKSYIRSG  60
DLKWHFFCPR ERKYSSGVRA KRATESGYWK TTGKERPVLC NNEVVGKIKT LVYHLGKSPR  120
GERTDWVMHE YKLEDKALTE MNVPQDTYVV CVLFKKDGPG PRNGAQYGAP FKEEDWSDDE  180
EEQTHLPATE NPKNLPGPSK ETSLVLTASH APKDCVLGMI SESCVSDLLP AVTTRLPPLS  240
NAANTPISAP IQAPDNNDDD IYSLLDRFVA DDEFLPFGEH TNNEIRTEGD FSGVREVPMS  300
LEESIFSGLP DLGNMLNNIP TTPSYSYDHV ENSEFYLELL DLTAPLTPLP TTSQNTNLND  360
PRISHLNQSS HHLMGFSAAA DGGDDDPYGF AAAMGHGPNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-43515614168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA44G00210
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287905.10.0NAC domain-containing protein 82
SwissprotQ9FY821e-170NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A1J3CRN80.0A0A1J3CRN8_NOCCA; NAC domain-containing protein 78
STRINGXP_006287905.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36922562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.41e-165NAC domain containing protein 82
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]