PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA40G00417
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HSF
Protein Properties Length: 469aa    MW: 52664.3 Da    PI: 4.6217
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA40G00417genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.91.1e-35301222103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++ ++++sws+ +nsfvv++  ef+k +Lp+ Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i 
    AA40G00417  30 FLSKTYDMVDDPSSNDVVSWSSGNNSFVVWNVPEFSKVLLPRCFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKNIS 117
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k +
    AA40G00417 118 RRKPS 122
                   **975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.9E-3525119IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.9E-6026119IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.6E-3826119IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.8E-183053IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-3030119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-186880IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406993IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-188193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MESVRESAPS ANSNSKASSI SSAVNSVPPF LSKTYDMVDD PSSNDVVSWS SGNNSFVVWN  60
VPEFSKVLLP RCFKHNNFSS FVRQLNTYGF RKVDPDRWEF ANEGFLRGQK HLLKNISRRK  120
PSHVQNQQQN QVQSSSVGAC VEVGKFGIEE EVERLKRDKN VLMQELVRLR QQQQATENQL  180
QNVGQKVQVM EQRQQQMMSF LAKAVQRPGF LNQLVQQNND GNRQISVSNK KRRLPGDSQN  240
NCESQEANDF NRQIVKYQPS MSEAAKAVLR EILQTSNSPK YESVLNNPDS FLLGDIPNPN  300
SSSEVYGATQ AEVSPNSAHT SMNDIAEARL SHHPQAGLVQ PNLGPVQGEQ AAASSDLVDC  360
SVDNGECFDP ITAVFDRSMD LQCDAISPEE ETELFDGVPK LPGILDSFWE QFLIDESLEI  420
GEADELLSRS LENDLVMEQE ESNQWTTTNQ QMNHLTEQME LLSSETKRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-242111920129Heat shock factor protein 1
5d5v_B8e-242111920129Heat shock factor protein 1
5d5v_D8e-242111920129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA40G00417
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400223.10.0heat stress transcription factor A-1b
SwissprotO818210.0HFA1B_ARATH; Heat stress transcription factor A-1b
TrEMBLV4N7P10.0V4N7P1_EUTSA; Uncharacterized protein
STRINGXP_006400223.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.20.0heat shock factor 3
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Bechtold U, et al.
    Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection.
    J. Exp. Bot., 2013. 64(11): p. 3467-81
    [PMID:23828547]
  3. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]