PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AA40G00128 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 228aa MW: 25575.8 Da PI: 8.3139 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.3 | 6.5e-06 | 13 | 35 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC++C+k+F+++ L H++ H AA40G00128 13 YKCNYCHKPFPTSQALGGHQNAH 35 9*******************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.19E-7 | 9 | 41 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.1E-4 | 11 | 39 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.2E-6 | 13 | 37 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.739 | 13 | 40 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 15 | 37 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 228 aa Download sequence Send to blast |
MMETYPPSSK KLYKCNYCHK PFPTSQALGG HQNAHKHERE WEKKQKEMES EYPGLSFLAP 60 YIDKPHLLLG GYSQHSLSNE NHLGISLDSF KRIGNNNDNN NNNNNKMYPS GGFFARGYKD 120 LNMTLPPRVT PTRFFGKGNT FGASSSKDSI FNSRRCFFKP RNLLSLPCPP QAMDLSMGLV 180 SKEINESSSD GSMNLISKIG RSNVVEIEDD DSEESQAKIL GIDLSLSL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AA40G00128 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006289398.1 | 2e-65 | uncharacterized protein LOC17881961 | ||||
TrEMBL | R0FJL2 | 6e-64 | R0FJL2_9BRAS; Uncharacterized protein | ||||
STRING | XP_006289398.1 | 9e-65 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6363 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G27880.1 | 4e-63 | C2H2 family protein |