PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA39G00725 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | ERF | ||||||||
Protein Properties | Length: 261aa MW: 29543.1 Da PI: 6.0416 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.1 | 1.9e-17 | 48 | 97 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+taeeAa a++ a+++++g AA39G00725 48 RYRGVRRRP-WGRYAAEIRDPL----SkERRWLGTFDTAEEAACAYDCAARAMRG 97 59*******.**********73....35999**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.2E-32 | 48 | 111 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.6E-11 | 48 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-29 | 48 | 104 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-21 | 48 | 105 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.944 | 48 | 105 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.25E-31 | 48 | 104 | No hit | No description |
PRINTS | PR00367 | 1.2E-9 | 49 | 60 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-9 | 71 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0051726 | Biological Process | regulation of cell cycle | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MEEAIMTLEG AEHKQPLNTS TPLKRKPSRT SPTTPPPSTT NNNTSTMRYR GVRRRPWGRY 60 AAEIRDPLSK ERRWLGTFDT AEEAACAYDC AARAMRGLKA RTNFIYPIPP LDSYNYHHHR 120 IFSPPLPPPM NMNMFLLPSM SPFTYSNSNL ESFNTSEVIS DVSPKAKKVS RSDNESMSSI 180 FEPEPAGSGL LQEIVQGFLP KPTSHPPPQE TNTLQVQEEE IQGGFGEVVS YNDEMGFVGD 240 ESTYKLMQNY GMFSQYCYQD Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-19 | 48 | 104 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for correct embryo patterning and cotyledon organogenesis. May regulate positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Involved in the cytokinin signaling pathway that promotes shoot regeneration, probably through transcriptional activation of target genes such as CUC1. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16339853, ECO:0000269|PubMed:17056621, ECO:0000269|PubMed:17376809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA39G00725 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006415822.1 | 6e-98 | ethylene-responsive transcription factor ESR2 | ||||
Swissprot | Q9FYK5 | 6e-90 | ESR2_ARATH; Ethylene-responsive transcription factor ESR2 | ||||
TrEMBL | V4K952 | 1e-96 | V4K952_EUTSA; Uncharacterized protein | ||||
STRING | XP_006415822.1 | 2e-97 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7355 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 2e-52 | DORNROSCHEN-like |