PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA32G00122 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | bZIP | ||||||||
Protein Properties | Length: 356aa MW: 38283.3 Da PI: 9.6407 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 71.7 | 1.1e-22 | 256 | 319 | 1 | 64 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 eke+kre+rkq+NRe+ArrsR+RK+ae+eeL kv++L aeN++L+++l++l++++++l+ e+e AA32G00122 256 EKEIKREKRKQSNRESARRSRLRKQAETEELSVKVDSLVAENMTLRSKLSQLNDKSETLRHENE 319 89*********************************************************99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 7.5E-33 | 1 | 95 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 4.5E-13 | 130 | 213 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 4.2E-15 | 251 | 316 | No hit | No description |
Pfam | PF00170 | 2.9E-21 | 256 | 319 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 2.1E-19 | 256 | 320 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.702 | 258 | 321 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.56E-10 | 259 | 315 | No hit | No description |
CDD | cd14702 | 1.30E-21 | 261 | 310 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 263 | 278 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MGSNEEGKST KSDKPSSAVP TQEQSNVHVY HPEWAAMQAY YGHRVAIPQY YNSNMAPGHA 60 PPPYMWGPPS PMMAPYGTPY PAFCPPGGVY SHPGVQMGSQ TQGHVSQATP AATTTPLNTD 120 TPAKSPGNTD HGFMKKLKEF DGLAMSIGNS KAGSADQSSE PRTSQSSGNE GSSNGSDGNT 180 TGGEQSRKKK SRKRSPTTDI RNSSQTRPIG DENEKLALAV VPLVMPTTMD LQNSSGANGV 240 LQAGHAVSPE VWYQNEKEIK REKRKQSNRE SARRSRLRKQ AETEELSVKV DSLVAENMTL 300 RSKLSQLNDK SETLRHENEA LLGQLKAAQA AQATGKTENL ISRVDKNNTG SVGSSS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 272 | 278 | RRSRLRK |
2 | 272 | 279 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. GBF2 is found to bind asymmetrically to the G-box. {ECO:0000269|PubMed:1373374}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA32G00122 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006396298.1 | 0.0 | G-box-binding factor 2 | ||||
Swissprot | P42775 | 1e-156 | GBF2_ARATH; G-box-binding factor 2 | ||||
TrEMBL | V4MYT2 | 1e-179 | V4MYT2_EUTSA; Uncharacterized protein | ||||
STRING | XP_006396298.1 | 1e-180 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3571 | 26 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01120.1 | 1e-113 | G-box binding factor 2 |
Publications ? help Back to Top | |||
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