PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA31G00430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | MYB_related | ||||||||
Protein Properties | Length: 63aa MW: 7449.36 Da PI: 5.0522 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30 | 1.2e-09 | 5 | 48 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ E +++ +a + + ++ +W +a+ +g +++++++k ++ AA31G00430 5 SWTAKENKRFERALAVYDKEtpeRWQNVANAVG-NKSAEEVKRHY 48 5*****************99*************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.481 | 1 | 52 | IPR017877 | Myb-like domain |
SMART | SM00717 | 5.0E-6 | 2 | 54 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-8 | 5 | 48 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-6 | 5 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.16E-6 | 5 | 48 | No hit | No description |
SuperFamily | SSF46689 | 3.29E-13 | 5 | 58 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 63 aa Download sequence Send to blast |
MTSFSWTAKE NKRFERALAV YDKETPERWQ NVANAVGNKS AEEVKRHYDV LVEDLMNIEY 60 INL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-21 | 5 | 59 | 10 | 64 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA31G00430 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018444178.1 | 4e-28 | PREDICTED: protein RADIALIS-like 6 | ||||
Swissprot | Q8GW75 | 4e-27 | RADL5_ARATH; Protein RADIALIS-like 5 | ||||
TrEMBL | M4D6S3 | 3e-28 | M4D6S3_BRARP; Uncharacterized protein | ||||
STRING | Bra012183.1-P | 5e-29 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19510.1 | 2e-29 | RAD-like 5 |