PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA30G00166
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family M-type_MADS
Protein Properties Length: 307aa    MW: 35525.9 Da    PI: 8.3591
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA30G00166genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.35.5e-201562249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +i+ +sn qvtfskRr g++KKA+EL +LC+a++++ +fs+ gk++ +
  AA30G00166 15 KIKKESNLQVTFSKRRFGLFKKASELATLCGAQILMFVFSPGGKVFSF 62
                7999*****************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.67666IPR002100Transcription factor, MADS-box
SMARTSM004324.5E-30665IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.29E-24782IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-18828IPR002100Transcription factor, MADS-box
PfamPF003192.3E-221562IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-182843IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-184364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MVKKSRGRQK IEIEKIKKES NLQVTFSKRR FGLFKKASEL ATLCGAQILM FVFSPGGKVF  60
SFGNPSVYDL INRIKFPNYY HNPYSFQSQN NDLQVAQGGP NLEIQSLNNQ LTGEVAKQEE  120
IRNDKKKLIT IKEKREEKGN WWEKKPKDLN FEEIQELTPR LQEILNFSLN QIMQNSQQNI  180
SQNNFGGEML LNNTNVGPTN MFGTNYNFNG GFDYVNQGEM TMVPMHNPYD NNNQNVMMPM  240
HNPYDNNQNV MMPMQNAYNH HDQNMMIHNY HGPSFGYDHN NINNNIYEGL TPGYNVGVPP  300
NYNFNQG
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA30G00166
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142941022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.13e-51M-type_MADS family protein