PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA30G00164
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB_related
Protein Properties Length: 85aa    MW: 9777.63 Da    PI: 8.898
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA30G00164genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.2e-101559345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT  E +l+ +a + +  +   +W+ +ar +g g+++++++ ++ 
       AA30G00164 15 SWTRKENKLFERALAIYDQDtpdRWHNVARAVG-GKSAEEVRRHYE 59
                     7*****************99*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.9791166IPR017884SANT domain
SMARTSM007179.6E-101264IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-61568IPR009057Homeodomain-like
SuperFamilySSF466896.58E-141569IPR009057Homeodomain-like
PfamPF002495.8E-81559IPR001005SANT/Myb domain
CDDcd001671.05E-71662No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MASNSMSSSH SSNSSWTRKE NKLFERALAI YDQDTPDRWH NVARAVGGKS AEEVRRHYEL  60
LIKDVNDIES GRYPYPNYRS NGNTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-33682177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA30G00164
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282757.28e-48protein RADIALIS-like 3
RefseqXP_009143738.17e-48PREDICTED: protein RADIALIS-like 3
RefseqXP_013740043.17e-48protein RADIALIS-like 3
SwissprotQ6NNN02e-44RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLR0GTL01e-46R0GTL0_9BRAS; Uncharacterized protein (Fragment)
STRINGBostr.7867s1513.1.p1e-47(Boechera stricta)
STRINGXP_006282757.12e-47(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-34RAD-like 1