PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA26G00751
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 362aa    MW: 41343.3 Da    PI: 6.5766
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA26G00751genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.5e-05205224120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 ++Cp C k+F+r  n++ H+
  AA26G00751 205 FSCPLCFKTFNRYNNMQMHM 224
                 89*****************9 PP
2zf-C2H214.40.00011289311123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C  Cgk+F  k + ++H +++
  AA26G00751 289 FSCRRCGKVFAVKGDWRTHEKNC 311
                 89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.0E-5205224IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.66205232IPR007087Zinc finger, C2H2
SMARTSM003550.61205227IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280207227IPR007087Zinc finger, C2H2
SuperFamilySSF576676.8E-6273309No hitNo description
Gene3DG3DSA:3.30.160.606.1E-5276309IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035557289309IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MSSDHPASAY PNNGYDDYSF NYSTSLSYIY NSHGSFFYPN LPNSNPNFTI NSTSPQSPPL  60
REALPLLSLS PINRHQEQEQ EQELHEYYFM ETEASNQNFL DEQSGSIHHH DDVTVDLHLG  120
LSNFGGDHVT AYNNGGSSGS DVVLDSIDDQ EHHHDHHHEH EHDQDQGVDV TLASHELYHH  180
NGLQRSHHHY WIPTPSQILI GPTQFSCPLC FKTFNRYNNM QMHMWGHGSQ YRKGPESLRG  240
TQPTGMLRLP CYCCAPGCKN NIEHPRARPL KDFRTLQTHY KRKHGARPFS CRRCGKVFAV  300
KGDWRTHEKN CGKLWYCSCG SDFKHKRSLK DHVKAFGNGH VPCDGIECFG EHEDDEAASD  360
VE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA26G00751
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013674815.11e-179zinc finger protein WIP4-like
SwissprotQ8W0301e-173ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBLA0A078J2W51e-177A0A078J2W5_BRANA; BnaA01g36760D protein
STRINGBra023918.1-P1e-178(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20880.11e-153WIP domain protein 4
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]