PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA26G00639
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family M-type_MADS
Protein Properties Length: 300aa    MW: 35036 Da    PI: 9.1735
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA26G00639genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.72.7e-221662349
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 +n+sn qvtfskRr g++KKA+EL++LC+a++a+++fs+  k+y +
  AA26G00639 16 MKNESNLQVTFSKRRSGLFKKASELCTLCGADIAIVVFSPGRKVYSF 62
                589******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.292666IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-31665IPR002100Transcription factor, MADS-box
CDDcd002653.39E-34783No hitNo description
SuperFamilySSF554553.66E-28790IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-18828IPR002100Transcription factor, MADS-box
PfamPF003191.2E-241662IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-182843IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-184364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MVRKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGADIAI VVFSPGRKVY  60
SFGHPNVETV INRFLNLNQN HLQQHEMQLS ENRRSAAVRE YNNRLTQVLS QLEEEKAKHN  120
KLKNLKKDNK NPQNWWEGPI EEFNLTQLTE FKSGLENLQK VVSMKASKCL QATHQHNFYT  180
GSSSSTNNIT FDLDLFNHRR MVQNTNYNMI VPSNNYTQIV ENNSNNDHDI TTQGQGRFFH  240
EEGIDNLRIG TAQGFAQDYN NMNYTSLYNS ENHQSQGFKQ ENVSEYDYLN HLDHHRRDYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A7e-14781175MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B7e-14781175MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C7e-14781175MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D7e-14781175MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A8e-14781175Myocyte-specific enhancer factor 2A
3kov_B8e-14781175Myocyte-specific enhancer factor 2A
3kov_I8e-14781175Myocyte-specific enhancer factor 2A
3kov_J8e-14781175Myocyte-specific enhancer factor 2A
3p57_A8e-14781175Myocyte-specific enhancer factor 2A
3p57_B8e-14781175Myocyte-specific enhancer factor 2A
3p57_C8e-14781175Myocyte-specific enhancer factor 2A
3p57_D8e-14781175Myocyte-specific enhancer factor 2A
3p57_I8e-14781175Myocyte-specific enhancer factor 2A
3p57_J8e-14781175Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA26G00639
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406472.12e-94agamous-like MADS-box protein AGL62
SwissprotQ9FKK27e-89AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLV4LBV34e-93V4LBV3_EUTSA; Uncharacterized protein
STRINGXP_006406472.16e-94(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-82AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]