PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA251G00004
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HD-ZIP
Protein Properties Length: 282aa    MW: 31436.2 Da    PI: 8.3892
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA251G00004genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.7e-18129183256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ ++tk+q   Lee F+++++++ +++  LAkkl+Lt rqV vWFqNrRa+ k
  AA251G00004 129 RKKLRLTKDQSAFLEETFKEHNTLNPKQKLALAKKLSLTARQVEVWFQNRRARTK 183
                  788899***********************************************98 PP
2HD-ZIP_I/II120.21.1e-38129218191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rl+k+q+++LEe+F+e+++L+p++K +la++L l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke  eLr +l
  AA251G00004 129 RKKLRLTKDQSAFLEETFKEHNTLNPKQKLALAKKLSLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLHKEAMELR-AL 218
                  69*************************************************************************************9.54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046182.8E-23291IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.2E-18113186IPR009057Homeodomain-like
SuperFamilySSF466891.88E-18115186IPR009057Homeodomain-like
PROSITE profilePS5007117.265125185IPR001356Homeobox domain
SMARTSM003891.7E-15127189IPR001356Homeobox domain
PfamPF000461.2E-15129183IPR001356Homeobox domain
CDDcd000861.11E-15129186No hitNo description
PROSITE patternPS000270160183IPR017970Homeobox, conserved site
PfamPF021831.3E-8185219IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.1E-24185228IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009826Biological Processunidimensional cell growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MMMGKEDLGL SLSLGFSQNH NNLQLNLKPN NSSLSNLQTF PWNQTFVPPS DLRKIDVNNH  60
PTTVDCEEET GVSSPNSTIS SSISGKRNER EGISGIGVAS GGHDHEITPD RAYSRGSSDE  120
EEDGGETSRK KLRLTKDQSA FLEETFKEHN TLNPKQKLAL AKKLSLTARQ VEVWFQNRRA  180
RTKLKQTEVD CEYLKRCVEK LTEENRRLHK EAMELRALKL SPQFYGQMTP PTTLIMCPSC  240
ERVAGPSSNH VAGQSHHRAG SVNQWLSCAG HGPSLEALRP RS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127133SRKKLRL
2177185RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00550DAPTransfer from AT5G47370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA251G00004
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871204.11e-168homeobox-leucine zipper protein HAT2
SwissprotP466011e-169HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBLA0A178UFY11e-168A0A178UFY1_ARATH; HAT2
STRINGAT5G47370.11e-168(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15632690
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47370.11e-123Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]