PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA21G00432
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family SBP
Protein Properties Length: 870aa    MW: 97630 Da    PI: 6.5653
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA21G00432genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.95.3e-4274151178
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 +Cqve+Ceadls++k+yhrrhkvC++hska++++v g+ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  AA21G00432  74 VCQVENCEADLSKVKDYHRRHKVCQMHSKATSAIVGGIVQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKTNP 151
                 6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575118No hitNo description
Gene3DG3DSA:4.10.1100.101.5E-3368136IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.52272149IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.53E-3973154IPR004333Transcription factor, SBP-box
PfamPF031101.4E-3075148IPR004333Transcription factor, SBP-box
CDDcd002044.68E-9641756No hitNo description
SuperFamilySSF484033.11E-8653756IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.1E-8653758IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 870 aa     Download sequence    Send to blast
MGRQFFPLGN SSNSSSSCSD GGIGSHELMG EKKRRAVAIE EDNNNGGNLT LKLGDNNGGV  60
KKTKLCGNGS NHPVCQVENC EADLSKVKDY HRRHKVCQMH SKATSAIVGG IVQRFCQQCS  120
RFHVLEEFDE GKRSCRRRLA GHNKRRRKTN PETVTNGNPS SDDHQSRNYA LITLLKIISN  180
MYSNQPNQTG DQDLLSHVLK SLVSLGGEQM EKNLIGHLQG RPQASMNNGN SALLAPQEDL  240
KQVSVDVPET PRQEVYVNGS NRTEKQVKVN DFDLNDTYID SDDGTDGERS SPPINPATSS  300
HDYPTWIRQD SHQSSPPQTS RNSDSDQSPS SISGDAHCRT GRIEIKLFGK APNDFPVVLR  360
GEILDWLSHS PTDIESYIRP GCVILTIYLR QAEAAWEELC DDLGFSLRRL LDLTNDPLWT  420
TGWIYVRVQN QMAFVFNGHV VVDTFLPLRS SDHSHIISVR PIAVATTTRK VQFTVKGINL  480
HRSDTRLLCA LEGKYLFQES THENDDHKEN NEMECVKFSC EMPLTKGGRG FMEIEDQGLS  540
SSFFPFIVVE DDVCSEIRVL ESTLEFIGTD SAKQAMEFIY EIGWLLHRSK LKSRFGESYP  600
NTDEFSLKRF KWLIEFSMDR EWCAVIRHLL NTFFEGVVGS EEGSSIDATL SELCLLHRAV  660
RKNSKPMVEM LLRYVPKQQR NSRNQNSLFR PDATGPAGLT PLHIAAGKDG SEDVLDALTE  720
DPAMVGIEAW KTSKDNTGFT PEDYARLRGH FSYIHLVQRK LNKKSSGEDH VVVSIPILLT  780
DVTTDENEEK EIKTGLVSST MEIAQSNCKL CDHKLAYRTR SRSLAYRPAM LSMVAIAAVC  840
VCVALLFKSC PEVLYVFQPF RWELLDYGTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-31741481084squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00603PBMTransfer from AT2G47070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA21G00432
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023639628.10.0squamosa promoter-binding-like protein 1
RefseqXP_023639629.10.0squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLA0A1J3IQZ60.0A0A1J3IQZ6_NOCCA; Squamosa promoter-binding-like protein 1
STRINGCagra.16630s0008.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30302764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]