PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA184G00002
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family Dof
Protein Properties Length: 281aa    MW: 30852 Da    PI: 9.4289
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA184G00002genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.62.8e-382787262
       zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                 ++ +lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGg+ rknk+s+
  AA184G00002 27 QQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGSYRKNKRSK 87
                 67899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.1E-333085IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.9013185IPR003851Zinc finger, Dof-type
ProDomPD0074783.0E-273185IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103369IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MQTKNRVPVN NMAGASSQQQ QQHQQQQQPQ LKCPRCDSSN TKFCYYNNYS LSQPRHFCKA  60
CKRYWTRGGT LRNVPVGGSY RKNKRSKRPA SASTTSINGC SSNNPQNTSH LSSMNHPLFY  120
GLSNHSNLPM IQNRFSNSTK TSSSGLESTD QFLSSGFSDL SGFENTINGG FINKPFILSG  180
LFGSSSSSTS NVLQNPLKPV VNDVDFLGQS HLQTLSSLQD LHVGSNNEGM DKEEKLDQVS  240
GFFSSSLDPS NYNNIWNPSV VNGAWLDPTS NNIGSSLTSL I
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA184G00002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593055.11e-109PREDICTED: dof zinc finger protein DOF1.4-like
RefseqXP_013692400.11e-109dof zinc finger protein DOF1.4-like isoform X1
RefseqXP_013692401.11e-109dof zinc finger protein DOF1.4-like isoform X1
SwissprotQ9FZA41e-102DOF14_ARATH; Dof zinc finger protein DOF1.4
TrEMBLA0A078JJD91e-108A0A078JJD9_BRANA; BnaCnng51540D protein
TrEMBLA0A0D3D6961e-108A0A0D3D696_BRAOL; Uncharacterized protein
STRINGBo7g048220.11e-108(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47092650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.11e-95Dof family protein