PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AA17G00120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 312aa MW: 35035.4 Da PI: 5.1266 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.4 | 1.7e-10 | 160 | 206 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RR+++N++f L ++l + + +K +K++iL A++ +++L AA17G00120 160 KACREKLRREKLNDKFMDLSSVLEPG---RTPKTDKSAILDDAIRVVNQL 206 5689*********************8...8****************9998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.487 | 155 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.3E-8 | 160 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.0E-10 | 161 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-12 | 162 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.0E-12 | 163 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.51E-8 | 163 | 207 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 312 aa Download sequence Send to blast |
MFPSIDDDDL LAALCFDQRN GLQDPYPYLQ TDQEDIFPNF ESSGVNLQPE QEGICNNIGA 60 QFDLFSENLP QQQQSLCNVN GDNNLQPYGG VFYSSSIGSP LDLASYSGFL SQEPHQLCSA 120 VVEINSSSSV GTVKQEEEHV VEECSRKRGR IGSCSEPGMK ACREKLRREK LNDKFMDLSS 180 VLEPGRTPKT DKSAILDDAI RVVNQLRGEA HELKETNQKL LEEIKSLKVE KNELREEKLV 240 LKANKKKIEQ QIKSMAVPSP GYMSTHPAAA FHGNKMAVFP SYSYFPNMPM WPYLHPLDRD 300 TSHDHLKRPP AA |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00372 | DAP | Transfer from AT3G23210 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AA17G00120 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006406065.1 | 1e-146 | transcription factor bHLH34 | ||||
Swissprot | Q9LTC7 | 1e-134 | BH034_ARATH; Transcription factor bHLH34 | ||||
TrEMBL | A0A087HBV7 | 1e-149 | A0A087HBV7_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HBV7 | 1e-149 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4026 | 26 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G23210.1 | 1e-128 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|