PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA166G00004

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

Trihelix

Protein Properties

Length: 358aa MW: 42204.1 Da PI: 4.3137

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA166G00004	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47	6.6e-15	109	194	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++qe +L+e+ ++ +l+r++l+ +W e+++k++e+ + ers +qC+ ++nl+++ykk+k+ +k ss+++++++l+ AA166G00004 109 EWKEQEAFVLLEIWGDRFLQLNRRSLRNEDWIEIAEKVSEEIMsERSETQCRRMMNNLKMKYKKEKTKVEKS-RLGSSKWVFYNKLD 194 5***********************************7666659*****************999984.78899*****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.7E-19	109	195	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MSDSEDDSRY PKKFLSLNRQ KHPMYSRPIP KRHAYYQEEE DDDEEEQEDD ELDGYPNQND 60 EDEYKPQGGY NRNFTSKEEL ERIHKRQKQN KQVSGYELAG TSDTKAAYEW KEQEAFVLLE 120 IWGDRFLQLN RRSLRNEDWI EIAEKVSEEI MSERSETQCR RMMNNLKMKY KKEKTKVEKS 180 RLGSSKWVFY NKLDMLLSSS PKSDSNLACG VDSGEFVFMN TRVYLEKSNG FDEMMDSPGE 240 SEEEDEEDER MIKMNDSASY MLLADSVKRF GKVYEKIEKS KKDHMKELEK MRADFQRDLE 300 LQKKQILDKA QSEISKIREE VENGNGNDDD DDDDGNDVES NDDDDEMENE SAANLSDE

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MSDSEDDSRY PKKFLSLNRQ KHPMYSRPIP KRHAYYQEEE DDDEEEQEDD ELDGYPNQND  60
EDEYKPQGGY NRNFTSKEEL ERIHKRQKQN KQVSGYELAG TSDTKAAYEW KEQEAFVLLE  120
IWGDRFLQLN RRSLRNEDWI EIAEKVSEEI MSERSETQCR RMMNNLKMKY KKEKTKVEKS  180
RLGSSKWVFY NKLDMLLSSS PKSDSNLACG VDSGEFVFMN TRVYLEKSNG FDEMMDSPGE  240
SEEEDEEDER MIKMNDSASY MLLADSVKRF GKVYEKIEKS KKDHMKELEK MRADFQRDLE  300
LQKKQILDKA QSEISKIREE VENGNGNDDD DDDDGNDVES NDDDDEMENE SAANLSDE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA166G00004

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010527185.1	1e-152	PREDICTED: trihelix transcription factor ASIL2 isoform X1
TrEMBL	A0A1J3INS7	1e-150	A0A1J3INS7_NOCCA; Trihelix transcription factor ASIL1
STRING	XP_010527185.1	1e-151	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9779	27	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-131	Trihelix family protein