PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA15G00017
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HD-ZIP
Protein Properties Length: 836aa    MW: 91956.5 Da    PI: 6.4169
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA15G00017genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-181775357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  AA15G00017 17 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                5679*****************************************************97 PP
2START168.16e-531613692205
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  W +++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+++d++ W + ++++++l+v+ ++  g+++l +++l
  AA15G00017 161 IAEETLAEFLSKATGTAVEWIQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPT-RVAEIVKDRPSWFRECRAVDVLNVLPTAngGTIELLYMQL 258
                 7899******************************************************.7777777777****************9999********** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++l+p Rdf+ +Ry+  l++g++v++++S+ s+q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl++ +++++lr+l++s  + ++
  AA15G00017 259 YAPTTLAPpRDFWLLRYTSVLEDGSLVVCERSLKSTQNGPSmplVQHFVRAEMLPSGYLIRPCDGGGSIIHIVDHMDLEACSVPEVLRPLYESPKVLAQ 357
                 ****************************************999999***************************************************** PP

                 HHHHHHTXXXXX CS
       START 194 ktwvatlqrqce 205
                 kt++a+l+++++
  AA15G00017 358 KTTMAALRQLKQ 369
                 ********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.2E-151480IPR001356Homeobox domain
SuperFamilySSF466895.13E-171680IPR009057Homeodomain-like
CDDcd000869.27E-171777No hitNo description
PfamPF000462.9E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-181975IPR009057Homeodomain-like
PROSITE profilePS5007115.2732076IPR001356Homeobox domain
CDDcd146861.57E-669108No hitNo description
PROSITE profilePS5084824.922151379IPR002913START domain
CDDcd088752.57E-74155371No hitNo description
SuperFamilySSF559614.94E-36160372No hitNo description
SMARTSM002349.3E-37160370IPR002913START domain
Gene3DG3DSA:3.30.530.201.7E-20160342IPR023393START-like domain
PfamPF018521.6E-50161369IPR002913START domain
PfamPF086701.5E-52693835IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    Send to blast
MAMSCKDNKM GCLDNGKYVR YTPEQVEALE RLYHECPKPS SIRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VHENSYFRQH  120
TQNTALPAKD TSCESVVTSG QHQLASQNPP RDASPAGLLS IAEETLAEFL SKATGTAVEW  180
IQMPGMKPGP DSIGIIAISH GCTGVAARAC GLVGLEPTRV AEIVKDRPSW FRECRAVDVL  240
NVLPTANGGT IELLYMQLYA PTTLAPPRDF WLLRYTSVLE DGSLVVCERS LKSTQNGPSM  300
PLVQHFVRAE MLPSGYLIRP CDGGGSIIHI VDHMDLEACS VPEVLRPLYE SPKVLAQKTT  360
MAALRQLKQI AQEVTQTNNS VNGWGRRPAA LRALSQRLSR GFNEAVNGFT DEGWSVIGDT  420
MDDVTILVNS SPDKLMGLNL TFSNGFAPVS SAVLCAKASM LLQNVPPAIL LRFLREHRSE  480
WADNNIDAYL AAAVKVGPCS ARVGGYGGQV ILPLAHTIEH EEFMEVIKLE GLGHSPEDAI  540
VPRDIFLLQL CNGMDENAVG TCAELIFAPI DASFADDAPL LPSGFRIIPL DSAKEVSSPN  600
RTLDLASALE IGSAGTKAST DQSGNTSCAR SVMTIAFEFG IESHMQDHVA SMARQYVRGI  660
IASVQRVALA LSPSHISSQV GLRTPLGTPE AQTLARWICQ SYRCYMGVEL LKSNSENNES  720
VLKNLWHHTD AIMCCSMKAL PVFTFANQAG LDMLETTLVA LQDISLEKIF DDNGRKTLCT  780
EFPQIMQQGF ACLQGGICLS SMGRPVSYER AVAWKVLNEE ETAHCICFVF INWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA15G00017
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4394490.0AJ439449.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein (ATHB-15 gene).
GenBankAY0605560.0AY060556.1 Arabidopsis thaliana At1g52150/F5F19_21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020868586.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLV4KGD20.0V4KGD2_EUTSA; Uncharacterized protein
STRINGXP_010479714.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20222678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]