PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA12G00223 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | C3H | ||||||||
Protein Properties | Length: 333aa MW: 36077.7 Da PI: 9.3357 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.1 | 5.4e-07 | 43 | 63 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++f G+C++Gd+C F+H AA12G00223 43 PCNNFITKGFCHRGDSCLFSH 63 7******************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 8.624 | 1 | 11 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0029 | 13 | 39 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 8.972 | 13 | 37 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.019 | 38 | 66 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1 | 41 | 65 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.41E-7 | 42 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 43 | 65 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
GEKCKFSHDT TPLTKSMPCC YFATQSCMKG DDCAYDHDLS KYPCNNFITK GFCHRGDSCL 60 FSHKETPQSA SDALHSKDKP NATSSTNITA TSFSFGVSPQ KTNKQTVREA IARLPTIQAR 120 VSIPGPVAFL NPSSQSNERT SSELVTPPQI PPFRKPPMAP KGLSFLSSDK TIDKNTTKPQ 180 ASSFVQNLCS PGTTTANSDD QNLKQMQQRH SLPPVPPKGI SFVSFASDVC SGSMTQKPSD 240 EHQAVADQEP MLTQEVTVSK NLKVTTNSHI QSSLVSAMKL AAKLESGKSE RGMKKPAAVN 300 KLDVNVSVAK SGNISSKILE FLSSFSHDNK RQN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA12G00223 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006401265.1 | 1e-119 | zinc finger CCCH domain-containing protein 65 | ||||
Swissprot | Q9LTS7 | 1e-116 | C3H65_ARATH; Zinc finger CCCH domain-containing protein 65 | ||||
TrEMBL | V4LS75 | 1e-117 | V4LS75_EUTSA; Uncharacterized protein | ||||
STRING | XP_006401265.1 | 1e-118 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12160 | 15 | 16 |