PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA12G00160
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 350aa    MW: 38981.6 Da    PI: 7.075
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA12G00160genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.0004166188123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C+++F++   L  H  +H
  AA12G00160 166 YQCKTCDRTFPSFQALGGHRASH 188
                 9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.22E-5164193No hitNo description
PfamPF139122.0E-12165190IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.492166193IPR007087Zinc finger, C2H2
PROSITE patternPS000280168188IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEAAAAKEYS LILKGKRTKR QRQQSPIPFS ISPPLVSFES PTMEEEVTNL ESKEKITTFD  60
GLGFDVQKEN VVMITSSYSS ASSSSNTTLK IAAAAAAPEE YDEDQDMANC LILLAQGHSL  120
PQNQPQEVII RYNNNNKKED SYRFSSRKFL ETCSNNGEGK SGYYVYQCKT CDRTFPSFQA  180
LGGHRASHKK PKTTSFYSNL DLKKPTYNDT VSLLTTNTTT YNKSSNRSSL MLYGKGSNKV  240
HECGICGAEF TSAVPAAANT ELSLSSMSFD QISSDGQDLK IPVTKRAKIN TVVSLDLDLN  300
LLPKPEDENR FNGFSFASKQ KQEQEHEEIK KRREESIVLT TTPTLVDCHY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA12G00160
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_196059.11e-136C2H2-type zinc finger family protein
TrEMBLQ84K311e-135Q84K31_ARATH; C2H2-type zinc finger family protein
STRINGAT5G04390.11e-135(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-107C2H2 family protein