PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA114G00014 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | B3 | ||||||||
Protein Properties | Length: 149aa MW: 17614.4 Da PI: 9.978 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.6 | 6.8e-11 | 36 | 133 | 3 | 83 |
EE-..-HHHHT.T-EE--HHH.HTT................---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 3 kvltpsdvlks.grlvlpkkfaeeh................ggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 k+lt+sdv k grl +p + + e +k+ ++ +++ d++g sW++ l r++ yvl +GW++ v+ n+ +e+D++ AA114G00014 36 KTLTKSDVKKVeGRLLIPFSQLIEQnfftpeelttmeedeyR-SKKIGVPIRVIDQRGpipVSWNLSL--RRRNLNYVLVSGWNQIVERNRFEENDSI 130 889999999977999999888655569999988888777742.34488899*****************..999999*********************9 PP EEE CS B3 81 vFk 83 ++ AA114G00014 131 TIW 133 975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03754 | 1.7E-30 | 13 | 120 | IPR005508 | B3 domain-containing protein |
Gene3D | G3DSA:2.40.330.10 | 2.6E-17 | 24 | 148 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-15 | 31 | 146 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.42E-10 | 35 | 145 | No hit | No description |
PROSITE profile | PS50863 | 10.236 | 54 | 149 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MYRTMNGFLL PKDTPQWLIS RMRYMEGSEP KKIAKKTLTK SDVKKVEGRL LIPFSQLIEQ 60 NFFTPEELTT MEEDEYRSKK IGVPIRVIDQ RGPIPVSWNL SLRRRNLNYV LVSGWNQIVE 120 RNRFEENDSI TIWSFRSRDV LCFAIVPSD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA114G00014 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM273 | 10 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05930.1 | 3e-26 | B3 family protein |