PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA102G00055 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | bHLH | ||||||||
Protein Properties | Length: 148aa MW: 16090 Da PI: 7.4537 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.1 | 0.00018 | 9 | 40 | 19 | 55 |
HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ L +l+ + +K + a++L +A+ YI+ Lq AA102G00055 9 RIAALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 40 677777777776.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.287 | 1 | 39 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.28E-10 | 2 | 50 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.02E-6 | 2 | 44 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.5E-7 | 5 | 46 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
VRKEKLGGRI AALHQLVSPF GKTDTASVLS EAIGYIRFLQ SQIEALSLPY FGSTASGNIR 60 HQQNLQGDRS CIFPEDPGQL VNDHCMKRRG VSSSTENETL NLNPNEESKK DLRSRGLCLV 120 PISCTLQVGS DNGADYWTPA TLGSAGFH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA102G00055 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002869453.1 | 4e-87 | transcription factor bHLH68 isoform X1 | ||||
Swissprot | Q8S3D1 | 8e-88 | BH068_ARATH; Transcription factor bHLH68 | ||||
TrEMBL | A0A1J3HCN9 | 7e-87 | A0A1J3HCN9_NOCCA; Transcription factor bHLH68 | ||||
STRING | Bostr.7867s0753.1.p | 4e-87 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1872 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29100.1 | 6e-86 | bHLH family protein |
Publications ? help Back to Top | |||
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