PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 916307
Common NameARALYDRAFT_916307
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 93aa    MW: 10557.9 Da    PI: 8.5137
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
916307genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.73.7e-0724592054
            HHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
     HLH 20 feeLrellPk.askapskKlsKaeiLekAveYIksL 54
              +Lr++lP+   + +s K+s + +L+++++YI++L
  916307 24 VTKLRQILPEiGQRRRSDKVSASKVLQETCNYIRNL 59
            579*******999*********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.953459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-71975IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-72279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-42359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSNRRSRQSS SAPRISDDQM IDLVTKLRQI LPEIGQRRRS DKVSASKVLQ ETCNYIRNLN  60
REVDNLSERL SQLLESVDED SPEAAVIRSL LM*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap916307
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0882461e-138AY088246.1 Arabidopsis thaliana clone 4734 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002870750.13e-58transcription factor PRE1
RefseqXP_006405588.13e-58transcription factor PRE1
SwissprotQ9LJX19e-52PRE5_ARATH; Transcription factor PRE5
TrEMBLD7MJG86e-57D7MJG8_ARALL; Uncharacterized protein
TrEMBLV4NKZ46e-57V4NKZ4_EUTSA; Uncharacterized protein
STRINGscaffold_704049.11e-57(Arabidopsis lyrata)
STRINGXP_006405588.11e-57(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.14e-54bHLH family protein