PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 916307 | ||||||||
Common Name | ARALYDRAFT_916307 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 93aa MW: 10557.9 Da PI: 8.5137 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.7 | 3.7e-07 | 24 | 59 | 20 | 54 |
HHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 20 feeLrellPk.askapskKlsKaeiLekAveYIksL 54 +Lr++lP+ + +s K+s + +L+++++YI++L 916307 24 VTKLRQILPEiGQRRRSDKVSASKVLQETCNYIRNL 59 579*******999*********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.953 | 4 | 59 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.4E-7 | 19 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-7 | 22 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-4 | 23 | 59 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
MSNRRSRQSS SAPRISDDQM IDLVTKLRQI LPEIGQRRRS DKVSASKVLQ ETCNYIRNLN 60 REVDNLSERL SQLLESVDED SPEAAVIRSL LM* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 916307 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY088246 | 1e-138 | AY088246.1 Arabidopsis thaliana clone 4734 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002870750.1 | 3e-58 | transcription factor PRE1 | ||||
Refseq | XP_006405588.1 | 3e-58 | transcription factor PRE1 | ||||
Swissprot | Q9LJX1 | 9e-52 | PRE5_ARATH; Transcription factor PRE5 | ||||
TrEMBL | D7MJG8 | 6e-57 | D7MJG8_ARALL; Uncharacterized protein | ||||
TrEMBL | V4NKZ4 | 6e-57 | V4NKZ4_EUTSA; Uncharacterized protein | ||||
STRING | scaffold_704049.1 | 1e-57 | (Arabidopsis lyrata) | ||||
STRING | XP_006405588.1 | 1e-57 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM259 | 28 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28857.1 | 4e-54 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 916307 |
Entrez Gene | 9306820 |