PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

912349

Common Name

ARALYDRAFT_912349

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

DBB

Protein Properties

Length: 184aa MW: 20064.6 Da PI: 5.5954

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
912349	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.6	2.3e-07	4	33	5	34
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++ fC ++ lC++C ++ H 912349 4 LCDACENAAAIVFCAADEAALCRSCDEKVH 33 6*****9****************998 PP
2	zf-B_box	26.7	1.2e-08	52	91	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 ++++C+ +e+ ++ ++Ce +++ lC +C + H g H 912349 52 NAPCCDICENAPAFFYCEIDGSSLCLQCDMVVHVGgkrtH 91 789***************************9996555556 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.395	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.56E-6	3	45	No hit	No description
SMART	SM00336	3.7E-7	4	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	6.0E-6	4	42	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.916	51	96	IPR000315	B-box-type zinc finger
SMART	SM00336	2.2E-12	51	96	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.7E-6	52	91	IPR000315	B-box-type zinc finger
CDD	cd00021	1.02E-7	56	96	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0010100	Biological Process	negative regulation of photomorphogenesis
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MRILCDACEN AAAIVFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLAEP SNAPCCDICE 60 NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRFLLLRQR IEFPGDKPKA NNMRDNLQNQ 120 RVSTNGNGEA NGKVDDEMID LNANPQRVHE PASNNNGIDV NNENNHEPAG IVPVGPFKRE 180 SEK*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269\|PubMed:18540109}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	912349

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493728	0.0	AB493728.1 Arabidopsis thaliana At4g38960 mRNA for hypothetical protein, partial cds, clone: RAAt4g38960.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002866826.1	1e-132	B-box zinc finger protein 19 isoform X1
Refseq	XP_020875573.1	1e-132	B-box zinc finger protein 19 isoform X1
Refseq	XP_020875574.1	1e-132	B-box zinc finger protein 19 isoform X1
Swissprot	C0SVM5	1e-130	BBX19_ARATH; B-box zinc finger protein 19
TrEMBL	D7MFQ5	1e-131	D7MFQ5_ARALL; Zinc finger (B-box type) family protein
STRING	scaffold_700091.1	1e-132	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2168	24	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38960.1	1e-122	DBB family protein

Link Out ? help Back to Top
Phytozome	912349
Entrez Gene	9304946