PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 90295 | ||||||||
Common Name | SELMODRAFT_450591 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | GRAS | ||||||||
Protein Properties | Length: 369aa MW: 40848.3 Da PI: 6.2289 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 253.9 | 6.1e-78 | 7 | 367 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIlea 105 +lL +c++a+++++ +++q+l++ l++l +gd++qRlaay ++AL ++a+ +++ ++a + + +++ + ++ +al f+++sP++++ + ++ +l+a 90295 7 LQLLNNCVQAIATNNVQRTQHLMWVLNDLGCLTGDANQRLAAYGLKALFGKIAG-TPTAAQAYHHNLDASATAKNFHNALLKFHDLSPWYQVVYTATSGVLLDA 109 589**************************************************9.888888888888888888888888888********************** PP GRAS 106 vegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvl 208 +eg++++H+iD++ sqG+QWp+L++ La+Rp+gpp +++T+v++p s + +e+++rL++fA+ +g+++e ++ +a+ l++l+ +++++ + +alaV+ ++ 90295 110 FEGKDAIHVIDIGHSQGTQWPTLIEGLATRPSGPPsVFKLTVVEDPCS-GLGSGSEVKSRLERFAKVMGLNMELRM-LATPLHSLTRDAFAIAKPDALAVCAHF 211 *******************************9999678*******774.5667789********************.699************************ PP GRAS 209 qlhrlldesvsleserdevLklvk.slsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhe 310 +l ++ +s+r+e+L++v+ +l+P++v+v e+++d +s++F + e + ++++++ds++ + ++ eer+ +E+ ++ ++v +a + e 90295 212 RLNHID------SSQRQEFLNFVRvELEPDLVIVGENDSDNTSADFSTVAGEVIGHFWSFLDSMSGAFKGHEcEERQIMEHL-FSTSVVARLASGMEL----SE 304 *****7......556789*****978**************************************888777774777777765.999998888876665....88 PP GRAS 311 tlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + e+W++r+++aGF++ + ++++++a++l++k +++ +++ +e+++lvl Wk+rp++++S+W+ 90295 305 SRESWNARMRSAGFEAEAPHDEIVETARMLVKKNDVN-WELRNEDNCLVLLWKHRPVTFCSVWK 367 8899*******************************88.9************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 40.02 | 1 | 348 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.1E-75 | 7 | 367 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042446 | Biological Process | hormone biosynthetic process | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
KESKWALQLL NNCVQAIATN NVQRTQHLMW VLNDLGCLTG DANQRLAAYG LKALFGKIAG 60 TPTAAQAYHH NLDASATAKN FHNALLKFHD LSPWYQVVYT ATSGVLLDAF EGKDAIHVID 120 IGHSQGTQWP TLIEGLATRP SGPPSVFKLT VVEDPCSGLG SGSEVKSRLE RFAKVMGLNM 180 ELRMLATPLH SLTRDAFAIA KPDALAVCAH FRLNHIDSSQ RQEFLNFVRV ELEPDLVIVG 240 ENDSDNTSAD FSTVAGEVIG HFWSFLDSMS GAFKGHECEE RQIMEHLFST SVVARLASGM 300 ELSESRESWN ARMRSAGFEA EAPHDEIVET ARMLVKKNDV NWELRNEDNC LVLLWKHRPV 360 TFCSVWKS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 6e-40 | 3 | 367 | 30 | 419 | Protein SHORT-ROOT |
5b3h_E | 6e-40 | 3 | 367 | 30 | 419 | Protein SHORT-ROOT |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002969159.2 | 0.0 | nodulation-signaling pathway 1 protein | ||||
TrEMBL | D8RD95 | 0.0 | D8RD95_SELML; GRAS family protein (Fragment) | ||||
STRING | EFJ30275 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP4082 | 15 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 1e-72 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | 90295 |
Entrez Gene | 9651440 |
Publications ? help Back to Top | |||
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