PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 90295
Common NameSELMODRAFT_450591
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family GRAS
Protein Properties Length: 369aa    MW: 40848.3 Da    PI: 6.2289
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
90295genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS253.96.1e-7873672374
   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIlea 105
             +lL +c++a+++++ +++q+l++ l++l   +gd++qRlaay ++AL  ++a+ +++ ++a + + +++ + ++  +al  f+++sP++++ + ++   +l+a
  90295   7 LQLLNNCVQAIATNNVQRTQHLMWVLNDLGCLTGDANQRLAAYGLKALFGKIAG-TPTAAQAYHHNLDASATAKNFHNALLKFHDLSPWYQVVYTATSGVLLDA 109
            589**************************************************9.888888888888888888888888888********************** PP

   GRAS 106 vegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvl 208
            +eg++++H+iD++ sqG+QWp+L++ La+Rp+gpp  +++T+v++p s    + +e+++rL++fA+ +g+++e ++ +a+ l++l+ +++++ + +alaV+ ++
  90295 110 FEGKDAIHVIDIGHSQGTQWPTLIEGLATRPSGPPsVFKLTVVEDPCS-GLGSGSEVKSRLERFAKVMGLNMELRM-LATPLHSLTRDAFAIAKPDALAVCAHF 211
            *******************************9999678*******774.5667789********************.699************************ PP

   GRAS 209 qlhrlldesvsleserdevLklvk.slsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhe 310
            +l ++       +s+r+e+L++v+ +l+P++v+v e+++d +s++F +   e + ++++++ds++  +  ++ eer+ +E+  ++ ++v  +a   +      e
  90295 212 RLNHID------SSQRQEFLNFVRvELEPDLVIVGENDSDNTSADFSTVAGEVIGHFWSFLDSMSGAFKGHEcEERQIMEHL-FSTSVVARLASGMEL----SE 304
            *****7......556789*****978**************************************888777774777777765.999998888876665....88 PP

   GRAS 311 tlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
            + e+W++r+++aGF++ +  ++++++a++l++k +++ +++ +e+++lvl Wk+rp++++S+W+
  90295 305 SRESWNARMRSAGFEAEAPHDEIVETARMLVKKNDVN-WELRNEDNCLVLLWKHRPVTFCSVWK 367
            8899*******************************88.9************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.021348IPR005202Transcription factor GRAS
PfamPF035142.1E-757367IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
KESKWALQLL NNCVQAIATN NVQRTQHLMW VLNDLGCLTG DANQRLAAYG LKALFGKIAG  60
TPTAAQAYHH NLDASATAKN FHNALLKFHD LSPWYQVVYT ATSGVLLDAF EGKDAIHVID  120
IGHSQGTQWP TLIEGLATRP SGPPSVFKLT VVEDPCSGLG SGSEVKSRLE RFAKVMGLNM  180
ELRMLATPLH SLTRDAFAIA KPDALAVCAH FRLNHIDSSQ RQEFLNFVRV ELEPDLVIVG  240
ENDSDNTSAD FSTVAGEVIG HFWSFLDSMS GAFKGHECEE RQIMEHLFST SVVARLASGM  300
ELSESRESWN ARMRSAGFEA EAPHDEIVET ARMLVKKNDV NWELRNEDNC LVLLWKHRPV  360
TFCSVWKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B6e-40336730419Protein SHORT-ROOT
5b3h_E6e-40336730419Protein SHORT-ROOT
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002969159.20.0nodulation-signaling pathway 1 protein
TrEMBLD8RD950.0D8RD95_SELML; GRAS family protein (Fragment)
STRINGEFJ302750.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40821525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-72GRAS family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]