PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 884073
Common NameARALYDRAFT_683517
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 1261aa    MW: 142651 Da    PI: 6.6581
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
884073genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.93.6e-2711731233259
              --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
    WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
               D ++WrKYGqK + gs+fprsYYrCt++   gC ++k+v+rs+++ +++ itY +eHnh+
  884073 1173 ADLWTWRKYGQKYILGSNFPRSYYRCTYRftqGCLATKQVQRSDTNSNMFAITYISEHNHP 1233
              599*************************9999****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF522008.37E-511106IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525402.72E-52134394IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009316.7E-27168404IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3007.5E-12170291IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003641.7E-23172187No hitNo description
PRINTSPR003641.7E-23244258No hitNo description
PRINTSPR003641.7E-23334348No hitNo description
SuperFamilySSF467851.03E-11371472IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF520586.63E-34507858IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.104.6E-28511819IPR032675Leucine-rich repeat domain, L domain-like
PfamPF077258.5E-9574593IPR011713Leucine-rich repeat 3
PRINTSPR003641.7E-23806822No hitNo description
SuperFamilySSF467852.72E-510521138IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF1182902.48E-2411701235IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.1E-2511701235IPR003657WRKY domain
SMARTSM007743.2E-3711721234IPR003657WRKY domain
PfamPF031062.8E-2311741233IPR003657WRKY domain
PROSITE profilePS5081125.55711741235IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007165Biological Processsignal transduction
GO:0008219Biological Processcell death
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1261 aa     Download sequence    Send to blast
MTNCEKAEEL VCISCVDEVR YSFVSHLSEA LRRKGINNVV IEVEGDDLLS KESEAKIEKA  60
RVSVMILSRI CEPTRACHKF EKVRECQRNK NQVVVPVLYG ESPSLLDWIS VLDLKDLSAI  120
HHSRMECSDS KLVQEIVRDV YEKLFYKGRI GIYSKLLEIE NMVNKQPIGI RCVGIWGMPG  180
IGKTTLAKAV FDQMSSAFDA SCFIEDYDKA FHEKGLYCLL EEQLFKENPG NDATIMKLSS  240
LRDRLNSKRV LVVLDDVRNA LVAESFLEGF DWLGPGSLII ITSRDKQVFR LCGINQIYEV  300
QGLNEKEALQ LFLLCASMGE QNLHELSMKV VNYANGNPLA ISVYGRELKG KKKLSEMETA  360
FLKLKRRPPF KIFDAFKSSY DSLCDNEKNI FLDIACFFQG ENVNYVIQLL EGCGFFPHVE  420
IDVLVEKCLV TISENRVWLH NLTQDVGREI INGETVQIER RRRLWEPWSI KYLLEYNEHK  480
ACGEPKTTFK RTQGSDEIEG MFLDTSNLRF DVQPSAFKNM LNLKLLKIYC SNPEVHPVIN  540
FPKGSLHSLP NELRLLHWEN YPLQSLPQSF DPWHLVEINM PYSQLQKLWG GTKNLEMLRT  600
IRLCHSQHLV DIDDLFKAQN LEVIDLQGCT RLQNFPAAGQ LLRLRVVNLS GCIEIKSVLE  660
MPPNIETLHL QGTGILAFPV STVKPNRREL VNFLTEIPGL SEALKLERLT SLLESSSSCQ  720
DLGKLICLEL KDCSCLQSLP NMANLDLLNL LDLSGCSRLN SIQGFPRFLK KLYLGGTAIK  780
EVPQLPQSLE LLNARGSCLR SLPNMANLEF LKVLDLSGCS ELETIQGFPR NLKELYFAGT  840
TLREVPELPL SLELLNAHGS DSEKLPMHYT FSNFFDLSPQ VVNDFLVKAL TYVKHIPREY  900
TQELNNAPTF SFSAPSHKNQ NTTFGLQPGS SVITRLNTSW RNTLVGFGML VEVASSEDYC  960
DATGFGISCV CRWSNKEGRS CRIERNFHCW APAKVVSKFF PINQQTKCLD DRFIVTRCGV  1020
RVINVATGNT SLENISLVLS LDPVEVSGYE AVKEVLRVSY DDLQEMDKVL FLYISSLFND  1080
EDVDLVAPLI AGIDLDVSSG LKVLADVSLI SISSNGEIVM HCLVRQMGKE ILHEQSMLLS  1140
DCESSMTENL SDLPKKKKSK AKKVVCIPAT DEADLWTWRK YGQKYILGSN FPRSYYRCTY  1200
RFTQGCLATK QVQRSDTNSN MFAITYISEH NHPRPTKRKV LDGSTRSTSS SNYSANFCLI  1260
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4c6t_A3e-4661514151PROBABLE WRKY TRANSCRIPTION FACTOR 52
4c6t_C3e-4661514151PROBABLE WRKY TRANSCRIPTION FACTOR 52
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein involved in resistance to fungal and bacterial pathogens, including R.solanacearum, P.syringae pv. tomato and C.higginsianum. In presence of RPS4, elicites an EDS1-dependent hypersensitive response (PubMed:24146667). {ECO:0000250|UniProtKB:Q9FH83, ECO:0000269|PubMed:19519800, ECO:0000269|PubMed:19826224, ECO:0000269|PubMed:24146667, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap884073
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4704710.0AB470471.1 Arabidopsis thaliana at5g45260 mRNA for putative disease resistance protein, complete cds, ecotype: Ws-0.
GenBankHQ1706310.0HQ170631.1 Arabidopsis thaliana RRS1-R mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871197.10.0LOW QUALITY PROTEIN: disease resistance protein RRS1
SwissprotC4B7M50.0WR52W_ARATH; Disease resistance protein RRS1
TrEMBLD7MUR90.0D7MUR9_ARALL; Predicted protein
STRINGAl_scaffold_0008_3370.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2506814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45260.10.0Disease resistance protein (TIR-NBS-LRR class)
Publications ? help Back to Top
  1. Zhang ZM, et al.
    Mechanism of host substrate acetylation by a YopJ family effector.
    Nat Plants, 2017. 3: p. 17115
    [PMID:28737762]