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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
880439 |
Common Name | ARALYDRAFT_679883 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
GRAS |
Protein Properties |
Length: 591aa MW: 66715 Da PI: 6.4495 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
880439 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 97.8 | 1.6e-30 | 197 | 306 | 3 | 115 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIlea 105
+ L++cA+a+s+g++ela +++++l++++s +gdp qR+aay++e+Laar+a s++ ly+al+++e + s+e+laa+++++ev+P++kf++l+aN aI ea
880439 197 QILISCARALSEGKAELALSMVNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFLYRALKCKEPP---SDERLAAMQVLFEVCPCFKFGFLAANGAIIEA 296
78*****************************************************************9...9******************************* PP
GRAS 106 vegeervHii 115
++g++ + i
880439 297 IKGNQYMTLI 306
***9877555 PP
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2 | GRAS | 219.2 | 2e-67 | 342 | 529 | 183 | 370 |
GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
++++ +++++L +kpgE+l+Vn+++qlh+++desv++ ++rde+L++vksl+Pk+v+vveq++++n+++F+ rf+ea eyysa+f+sl+++lpres+er++v
880439 342 PSKTSIVSPSTLGCKPGETLIVNFAFQLHHMPDESVTTVNQRDELLHMVKSLNPKLVTVVEQDVNTNTSPFFSRFIEAYEYYSAVFESLDMTLPRESQERMNV 444
578899************************************************************************************************* PP
GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
Er++l+r+i n+vaceg+er+er e ++kWr+r+++aGF+p p+s k++++++ l+++ + + y+++ee g+l ++W++++L++
880439 445 ERQCLARDIANIVACEGEERIERYEAAGKWRARMMMAGFNPRPMSAKVTNNIQNLIKQQYCNRYKLKEEMGELHFCWEEKSLIVR 529
************************************************************777*******************975 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
Protein Sequence Length: 591 aa
Download sequence Send
to blast |
MVEQTVAREH IKARVMSLVR PAEPSATSYR NPKLYSLNDN GNNNGVTSAQ IFDPDRSKNT 60 CLTDDSYPSQ SYEKYFLDSP PDEFVQHPIG SGASVQLIWL FGLVSVSAKT GSWMFHGISE 120 EFDDEQMRSK IQELERALLG DEDEKMVGID NLMEIDNEWS YQNESEQHHD SPKESSSADS 180 NSHVSSKEVV SQATPKQILI SCARALSEGK AELALSMVNE LRQIVSIQGD PSQRIAAYMV 240 EGLAARMAAS GKFLYRALKC KEPPSDERLA AMQVLFEVCP CFKFGFLAAN GAIIEAIKGN 300 QYMTLIRYVA ELPGKRPRLS PTLNRRVKNH WFKTGTTCRA VPSKTSIVSP STLGCKPGET 360 LIVNFAFQLH HMPDESVTTV NQRDELLHMV KSLNPKLVTV VEQDVNTNTS PFFSRFIEAY 420 EYYSAVFESL DMTLPRESQE RMNVERQCLA RDIANIVACE GEERIERYEA AGKWRARMMM 480 AGFNPRPMSA KVTNNIQNLI KQQYCNRYKL KEEMGELHFC WEEKSLIVRC FSLESGEAYM 540 MMEKTVAAIP QKSFLEFPWR AERETRATVA NTAKTQVKIP KIFAFSFFGA *
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC015447 | 0.0 | AC015447.8 Arabidopsis thaliana chromosome I BAC F24J8 genomic sequence, complete sequence. |
GenBank | AF036300 | 0.0 | AF036300.1 Arabidopsis thaliana scarecrow-like 1 (SCL1) mRNA, partial cds. |
GenBank | AF210731 | 0.0 | AF210731.1 Arabidopsis thaliana scarecrow-like 1 (SCL1) mRNA, complete cds. |
GenBank | AY045833 | 0.0 | AY045833.1 Arabidopsis thaliana putative scarecrow 1 protein (At1g21450) mRNA, complete cds. |
GenBank | AY084492 | 0.0 | AY084492.1 Arabidopsis thaliana clone 109490 mRNA, complete sequence. |
GenBank | AY096626 | 0.0 | AY096626.1 Arabidopsis thaliana unknown protein (At1g21450) mRNA, complete cds. |
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |