PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

878939

Common Name

ARALYDRAFT_678383

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Dof

Protein Properties

Length: 329aa MW: 35353.9 Da PI: 9.7172

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
878939	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.1	1.9e-38	71	128	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 lkcprCds+ntkfCyynny+l+qPr+fCk+CrryWt+GGalrnvPvGgg+r+n+k+ 878939 71 GPLKCPRCDSSNTKFCYYNNYNLTQPRHFCKGCRRYWTQGGALRNVPVGGGCRRNNKK 128 5789**************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-34	56	124	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.9E-32	72	127	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.627	73	127	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	75	111	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003002	Biological Process	regionalization
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009611	Biological Process	response to wounding
GO:0009625	Biological Process	response to insect
GO:0009753	Biological Process	response to jasmonic acid
GO:0010439	Biological Process	regulation of glucosinolate biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MPTNSNHQHH HQHQLLENGS IISGHGLLSH QLPPLQANPN PSHQYVATSA GLPSRSMAER 60 ARQAKIPPPE GPLKCPRCDS SNTKFCYYNN YNLTQPRHFC KGCRRYWTQG GALRNVPVGG 120 GCRRNNKKGK NGNSKSSSSS SKQSSSSANA PSPSSGQLRT NHQFPFSPTL YNLTQLGGIG 180 LNLAATNSNN QSHQIGSSLM NDLGFLHVGN GRNTSTPMTG NIHENNNNNE NNLMASVGSL 240 SHFALFDPTT GLYAFQNEGN IGNNVGISGS STSMVDSRVY QTPPVKMEEQ PNLANLSRPV 300 SGLTSPGNQT NQYFWPGSDF SGPSNDLL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). Involved in the regulation of root development (PubMed:23057675). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Element of a regulatory network controlling indole glucosinolates (IGS) biosynthesis, probably by inducing the expression of accurate genes (e.g. CYP83B1). Promotes apical dominance (PubMed:16740150). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:16740150, ECO:0000269\|PubMed:23057675, ECO:0000269\|PubMed:30626969}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	878939

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA) (PubMed:10758484). Induced transiently in response to the generalist herbivore S.littoralis. Triggered by methyl jasmonate (MeJA) and wounding (PubMed:16740150). {ECO:0000269\|PubMed:10758484, ECO:0000269\|PubMed:16740150}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY062715	0.0	AY062715.1 Arabidopsis thaliana Strong similarity to zinc finger protein OBP2 (At1g07640; F24B9.30) mRNA, complete cds.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	F24B9	0.0	AC007583.2 Arabidopsis thaliana chromosome 1 BAC F24B9 sequence, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002892410.1	0.0	dof zinc finger protein DOF1.1 isoform X3
Swissprot	Q8L9V6	0.0	DOF11_ARATH; Dof zinc finger protein DOF1.1
TrEMBL	D7KH40	0.0	D7KH40_ARALL; Predicted protein
STRING	Al_scaffold_0001_706	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5336	17	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.2	1e-162	Dof family protein

Link Out ? help Back to Top
Phytozome	878939
Entrez Gene	9325718

Publications ? help Back to Top
Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]