PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 869802 | ||||||||
Common Name | ARALYDRAFT_669246 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 293aa MW: 33694.1 Da PI: 4.865 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.2 | 2.6e-07 | 170 | 214 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r RR+ri ++ +eL +l+P +Kl+ ae+ + A +Y+k Lq 869802 170 SIAARERRRRIAEKTHELGKLIPGG-----QKLNTAEMFQAAAKYVKFLQ 214 567899*****************86.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.22E-10 | 162 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.697 | 164 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-9 | 167 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.9E-5 | 170 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.0E-9 | 170 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.83E-4 | 186 | 217 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MSMDCLSYFF NYDPPVQLRD CFIPEMDMII PETDSFLFQS LPQLEFHQPL FQEEAPSQTH 60 FDPFCDQFLS PQEIFLPNPK TEIFNETHDL DFLLPTPKRQ KLVNSSYHCN NTHNHFQSHN 120 PNFFDPFGDL DFVPEASTFP EFRVPDFSLA FKVGRGDQDD TKKPTLSSQS IAARERRRRI 180 AEKTHELGKL IPGGQKLNTA EMFQAAAKYV KFLQSQVGIL QLMQTTKKGS SNVQMETRFL 240 LESQAVQEKL STEEVCLVPC EMVQDLTTEE TIWKNPNISR EINKLLSKDL AN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 869802 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY234412 | 0.0 | AY234412.1 Arabidopsis thaliana hypothetical protein (At2g34820) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002879517.1 | 0.0 | transcription factor bHLH53 | ||||
Swissprot | Q84RD0 | 0.0 | BH053_ARATH; Transcription factor bHLH53 | ||||
TrEMBL | D7LH48 | 0.0 | D7LH48_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0004_1965 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4547 | 25 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34820.1 | 0.0 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 869802 |
Entrez Gene | 9315584 |
Publications ? help Back to Top | |||
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